PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240578.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 416aa    MW: 45663.8 Da    PI: 8.0114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240578.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-17139184147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_008240578.1 139 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 184
                      899*****************************.***********996 PP
2Myb_DNA-binding55.99.7e-18191234146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_008240578.1 191 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.108134185IPR017930Myb domain
SuperFamilySSF466893.22E-28138232IPR009057Homeodomain-like
SMARTSM007179.4E-15138187IPR001005SANT/Myb domain
PfamPF002491.8E-16139184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-26140192IPR009057Homeodomain-like
CDDcd001678.40E-14142183No hitNo description
PROSITE profilePS5129427.228186240IPR017930Myb domain
SMARTSM007174.5E-15190238IPR001005SANT/Myb domain
PfamPF002492.7E-14191233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20193239IPR009057Homeodomain-like
CDDcd001671.49E-7202233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAPQHLKSDC VGFTRYEDLN FLPPPPVSHQ LSLSNTFGAM VHPHFYSGGQ DHSGTSSEMG  60
FEPFSPSSSP QSKKPWGFQP LENGGTRITD HGDQYPVLLG IDQKKGMPLI LAGVEADEGR  120
SLAAAGRTGT AGHTKSCARG HWRPAEDSKL KELVAQYGPQ NWNLIAEHLD GRSGKSCRLR  180
WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH  240
REQSNVYKRR KPSSPQATQL PKEFDHPPVT NFQKNTSSTE STVSISTIDD TQSASTCTEL  300
SLTPSTRLPL SFFSKLHPFQ QHQNFGFQMG SSSDGGSGKI IGNGNGLCKT GPLGGAMMGV  360
DQSGHQSDSN SEISGDESVT TTRTNVSLSG ENQNQNLNNN EKISMPFIDF LGVGMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-341392397107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240578.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240578.10.0PREDICTED: myb-like protein A
TrEMBLA0A314UST50.0A0A314UST5_PRUYE; Myb-like protein A
STRINGXP_008240578.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-67myb domain protein 105