PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240527.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 327aa    MW: 36147.9 Da    PI: 7.0695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240527.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_008240527.1 61 YSCSFCRREFRSAQALGGHMNVH 83
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-65887No hitNo description
PROSITE profilePS5015711.2196188IPR007087Zinc finger, C2H2
SMARTSM003550.00986183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEQARYWMWA KRKHNSLSSS QHDHLQVPIS NPSNDDSWEE QAFAEDAAGP LGGCIWPPRS  60
YSCSFCRREF RSAQALGGHM NVHRRDRARL KQSPNDETTL QNHHHPDDHS VQNHNPFSSS  120
SLGSFQYPSH QVCALVYNPN NPSSDPGATI ASSSPSSGSR VSAQLPCKEN CADQTLKIPP  180
SCSASLSFPQ SWSILGTNRN NYDKSVARNI IEAEKISGAV ESGCRAKGDH HVTSTTDLHN  240
LSVSLNLVVR CARPSISGDE DEAITSCKRR RKEDVPSSTP FFLKSGSVDK EHHLQSEGFE  300
LSCTSSIEDL DLELRLGDRP KVIKVDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125683229superman protein
2l1o_A1e-125683229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240527.10.0PREDICTED: uncharacterized protein LOC103339029
TrEMBLA0A251NW160.0A0A251NW16_PRUPE; Uncharacterized protein
STRINGXP_008240527.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10