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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 34751.2 Da PI: 4.8281 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g XP_008240463.1 43 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 92 799******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.6E-13 | 43 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-19 | 43 | 100 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.98E-32 | 43 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.7E-28 | 43 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.585 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEFQFQQQNQ ICFPAAAANK AVGIPISKVG KSKGRTRSNN TNKFVGVRQR PSGRWVAEIK 60 DTTQKIRMWL GTFETAEEAA RAYDEAACLL RGSNTRTNFI THVSLDSPLA SRIRNLLNTK 120 RGGSNKQVIE QTSSSIGDHD DMNASHPPTS STTSNDKYMT SNISTASTST CNSTSSGSDT 180 LSSEVFQDSQ LFDDVYRPDL RHCNEEFELS SSASQSNLSW GGFEPGVDEF SFAQQVFDLP 240 KHQAAAAASS STTSSTTTTT TAVEADSEFL EFERMKVERQ ISASLYAMNG VQEYMDTVYD 300 PNEPSWDLPP ICPLFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 34 | 109 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240463.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC170580 | 2e-69 | AC170580.3 Medicago truncatula chromosome 7 clone mte1-32m6, complete sequence. | |||
GenBank | BT052833 | 2e-69 | BT052833.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-G-8 unknown mRNA. | |||
GenBank | BT145624 | 2e-69 | BT145624.1 Medicago truncatula clone JCVI-FLMt-17M3 unknown mRNA. | |||
GenBank | DQ984942 | 2e-69 | DQ984942.1 Medicago truncatula Ser/Thr protein kinase (PRK), exostosin-like protein (EXO), putative RNA binding protein (RAN BP), transcription factor ERF (ERN), and alpha-tubulin (aTUB) genes, complete cds; and unknown gene. | |||
GenBank | EF396330 | 2e-69 | EF396330.1 Medicago truncatula ERF transcription factor (ERN) gene, complete cds. | |||
GenBank | EU038802 | 2e-69 | EU038802.2 Medicago truncatula ERN1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240463.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A2Q5W1 | 1e-103 | ERN1_MEDTR; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | M5VRY3 | 0.0 | M5VRY3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240463.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-29 | related to AP2 11 |
Publications ? help Back to Top | |||
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