PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240394.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 508aa    MW: 56935.7 Da    PI: 8.5816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240394.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-065577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_008240394.1 55 YVCEICNQGFQRDQNLQMHRRRH 77
                    9*********************9 PP
2zf-C2H215.26.1e-05132154123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k +  +s++k H++t+
  XP_008240394.1 132 WVCDKCSKGYAVQSDYKAHLKTC 154
                     58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-55477No hitNo description
Gene3DG3DSA:3.30.160.602.1E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PROSITE patternPS01359057137IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-4123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-5127152No hitNo description
SMARTSM0035565132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HPNPTEYTKL  240
ILTSTSPPAH PDHLQPTLVS NKALYNLDLQ LATTSNNIPI NEVSSVSSKR EENHSTQLQL  300
SIGSCDFGGG ELHQNKNVEH SNFMITNRNY SPRDKEMRER ESSSTTTNHH EHDDDQKPKP  360
SAGISISAAS SRLKEEAREQ LRLAMAEKAY AEEARRQAEH QIELAEKEFA NAKRIRQQAQ  420
AELDKAQALK EQAIKKVNST ILQITCHACK QQFIQADHPT TRSRATPTPT HEAINHSLVL  480
SYMSSAITSE GDPLDNNNIR PHHAKPAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17128181356Zinc finger protein JACKDAW
5b3h_F1e-17128181356Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240394.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
TrEMBLA0A314Z7Y20.0A0A314Z7Y2_PRUYE; Protein SHOOT GRAVITROPISM 5-like
STRINGXP_008240394.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-117indeterminate(ID)-domain 14