PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240376.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 465aa    MW: 50940.8 Da    PI: 6.9486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240376.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+ ++++a k++G g W+ I +++g ++t+ q++s+ qk+
   XP_008240376.1  59 REKWTEEEHHKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129420.94654108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-956106IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-1657106IPR006447Myb domain, plants
SMARTSM007171.2E-1158106IPR001005SANT/Myb domain
PfamPF002492.2E-1459102IPR001005SANT/Myb domain
CDDcd001675.24E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAVEDYSEAT GSNASVAAAD CSLKGDAQSK PVIELKEISS FGNDHTPKIR KPYTITKQRE  60
KWTEEEHHKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVSKE SSGPSEGSIT  120
PIEIPPPRPK RKPVHPYPRK SVDSLIGSPE RSPSPHFSVS GKGQESPTSV LSALGSDVLG  180
SAALDQPSRS ATPTSCTTDM RSTILSHVEK ENDYMTSNSS TEEVKESVPS VQLSADSTPE  240
KFACMKHGSG SNHIVGTEGD AGSPRASPSI KLFGRTVLVS DLDRQSPPGS VTKDSKAKQE  300
NCQRENDKLA QTLRLDELDT RLSLGGIVEH QKQSPNSQKV NPDAPPPWWF MHDGLIPFFQ  360
VRSCNQNSVQ IHANSCADET MKETETSLSH DGSVSAVEIL AEKHLEAVEI LAEKHLEAAD  420
ALREETQSLP CSSRKGFAPY KRCLADRNMN SSGEMRDRQR ARVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240374.10.0PREDICTED: protein REVEILLE 7-like isoform X1
RefseqXP_008240375.10.0PREDICTED: protein REVEILLE 7-like isoform X1
RefseqXP_008240376.10.0PREDICTED: protein REVEILLE 7-like isoform X1
RefseqXP_016651370.10.0PREDICTED: protein REVEILLE 7-like isoform X1
TrEMBLA0A251PEQ00.0A0A251PEQ0_PRUPE; Uncharacterized protein
STRINGXP_008240374.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-51MYB_related family protein