PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240256.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 282aa    MW: 31752.2 Da    PI: 5.9187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240256.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08175222455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L+ ++P +    sk +  a +L + ++Y++sLq
  XP_008240256.1 175 SHSLAERVRRGKINERLRCLQNIVPGC----SKTMGMAVMLDEIINYVQSLQ 222
                     8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16169239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-9169226No hitNo description
Gene3DG3DSA:4.10.280.107.3E-16171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.704171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAEFTSDMQS IAPSLPFLDI APNTNMEPIH QYTDQFNPNV LDFYSSLNFQ TCMPFSNDNY  60
FSSQGPEFQG NLVQNFPNFF DHDNKSNQND EAPAVQHLVG AGAGNGFQES KKRRAMDDVS  120
ESSSGISTPP VSETGVRRKN SSGRGKRHKK SNEKEDEKPK DVVHVRARRG QATDSHSLAE  180
RVRRGKINER LRCLQNIVPG CSKTMGMAVM LDEIINYVQS LQNQVEFLSM KLTAASSFYD  240
FNSETDDMET MQSAKVYEAV ELERMKREGY GGYGSFHSTW PL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240256.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240256.10.0PREDICTED: transcription factor BEE 1
SwissprotQ8GWK72e-63BEE3_ARATH; Transcription factor BEE 3
TrEMBLM5WFH90.0M5WFH9_PRUPE; Uncharacterized protein
STRINGXP_008240256.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-65BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]