PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240022.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 603aa    MW: 69309.6 Da    PI: 5.1485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240022.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011302322222
                     EETTTTEEESSHHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                      C  Cgk F++  + k+H ++
  XP_008240022.1 302 YCVVCGKKFKSEKQWKNHEQS 322
                     5*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.3E-22487IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.4E-23576IPR001623DnaJ domain
SMARTSM002711.0E-21769IPR001623DnaJ domain
PROSITE profilePS5007619.414877IPR001623DnaJ domain
CDDcd062573.46E-17866IPR001623DnaJ domain
PfamPF002261.1E-20974IPR001623DnaJ domain
PRINTSPR006257.1E-151028IPR001623DnaJ domain
PRINTSPR006257.1E-152843IPR001623DnaJ domain
PRINTSPR006257.1E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.19E-12285331No hitNo description
SMARTSM004512.8E-4298332IPR003604Zinc finger, U1-type
PfamPF121712.7E-10301326IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.43301325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
SMARTSM0035513575599IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224575603IPR007087Zinc finger, C2H2
PROSITE patternPS000280577599IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MASSERRCHY EVLGLARDCS PDEIRSSYKK LALQRHPDKL VQSGLSQAQA TAQFQELSQA  60
YEVLSDPKER AWYDSHRSQI LFADPNSANS VPDSVIPNLF SFFSTTVFSG YSDSGRGFYK  120
VYADVFNKIY ANELSYVRKL GLGLDTVREA PAMGNLESPY AQVTAFYNYW LGFCTVMDFF  180
WVDQYDVMSG PNRKVRRLME EDNKKLRKKA KREYNDTVRG LAEFVKKRDK RVMDMMVKRE  240
EERERKREEE REKKKKLEKE KLERAMAYEE PEWAKVVEEE EGGNGVEEME EEEEERRRKE  300
LYCVVCGKKF KSEKQWKNHE QSKKHRDKVA EFRESVGDEE FDAQEILEGE VEERGEVDDI  360
DGVDTDELGE GIREGLKIGE EENGVGVSDR EDKFYEVGDE NEREKVDEAV GLDGDDGEDE  420
MGVLEAMLAG RNSRKNAALR VEQEDSFVTD IHAENDDNEV EFMEYDNRKS TRRKGGARKD  480
RSKKSSGETK KVGRSEINSD RGEELNEHDN SHIEESASHS FVKKESKGDD QLARKKKSSS  540
QPVDKKENVK KEANSKSKNS SRGKKPKAAS KNSSNLCDTC GEEFDTRNKL HKHLGDTGHA  600
KLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203211KKLRKKAKR
2249255EREKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240022.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A251PBC80.0A0A251PBC8_PRUPE; Uncharacterized protein
STRINGXP_008240022.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-162DNAJ heat shock N-terminal domain-containing protein