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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27810.1 Da PI: 5.9167 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18 | 5.3e-06 | 35 | 84 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r ++erE++ R++ N+ f eL + l + ++ + Ka+iL +A++ +k+L XP_008239804.1 35 KRIHKSEREKQKREHFNELFLELADALELN----QQNNGKASILCEATRLLKDL 84 68899**********************998....68899999******999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-7 | 32 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.46E-6 | 32 | 84 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-11 | 34 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.979 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGSQDPVPAA DKANVTEASV RGACSGKKIQ GKIPKRIHKS EREKQKREHF NELFLELADA 60 LELNQQNNGK ASILCEATRL LKDLIGQIEY LQKENASLLS ESNYMTVEKN ELREDNSALE 120 TQIEKLHSEI EDKVVQSKPD LNAAPPCAEL RPEVASHFTG TSISLPTQDH SLQQAPAVFV 180 MPLCPDLQSY PLPDATQLTS NTTSHVSKPH ARYPTSVDSW PSQLLGEKPT AGKESRQLGN 240 STNTCRSRET DP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239804.1 | 0.0 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_008239805.1 | 0.0 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 4e-66 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A314Y042 | 1e-176 | A0A314Y042_PRUYE; Transcription factor bHLH47 | ||||
TrEMBL | M5WAB8 | 1e-178 | M5WAB8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239804.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-56 | bHLH family protein |