PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239795.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 481aa    MW: 54795.9 Da    PI: 6.24
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239795.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18209255148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
   XP_008239795.1 209 KGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 255
                      799*****************************.*************97 PP
2Myb_DNA-binding58.21.9e-18261303145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   XP_008239795.1 261 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 303
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.035204259IPR017930Myb domain
SuperFamilySSF466891.87E-32206302IPR009057Homeodomain-like
SMARTSM007174.8E-17208257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-29210263IPR009057Homeodomain-like
CDDcd001671.97E-16212255No hitNo description
PfamPF139214.3E-19212269No hitNo description
PROSITE profilePS5129422.269260310IPR017930Myb domain
SMARTSM007178.9E-18260308IPR001005SANT/Myb domain
CDDcd001673.84E-14263306No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22264308IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELNKLRENL ASQVPLLVPD NYMMKLYNMK DEFPFEASSS SSKGNYNYLQ DFHHLDHQFQ  60
VNGSSSNAMF GVQNPCFDPY NDTTYTYEAS TTDVKFYECK PLNAETNMGH GQVLDNFQSG  120
SGYLNFPTHT SDPLDHLMGS SHRSATNFLP LDYQDIKPMN FVVPDEVSCI NNTDQNGYYK  180
KFGMNGKSRV STLTRGSTYK GRKKSNVVKG QWTIEEDRLL IQLVEQYGVR KWSHIAQMLP  240
GRIGKQCRER WHNHLRPDIK KDTWSEEEDK ILIQAHAEIG NKWAEIAKRL PGRTENSIKN  300
HWNATKRRQY SKRKCRSKYP RGSLLQEYIK SLNLDSTGSS TGRQRKNKSG NNNATSPNNM  360
ASSSTKSHTQ QTQNNVGFSC ANDRLVPNHD FNEDHDFCFD DNMFQEGCSI DSLLDDIPCA  420
PVLGENNGDF DGKIMAQASV VADEEKDFEM EMQVDVDVGP VMESSEVKKE LDLVEMISQV  480
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-462073092104C-Myb DNA-Binding Domain
1msf_C1e-462073092104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239795.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L21e-105MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A314Y6B80.0A0A314Y6B8_PRUYE; Transcription factor MYB98-like
STRINGXP_008239795.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-107myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]