PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239749.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 20918.2 Da PI: 9.7835 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1e-09 | 15 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +l+P+ ska++ K ls L +A YIk+L+ XP_008239749.1 15 KTVERNRRIHMKGLCFKLASLVPPqHSKASNSKdtLSQQNQLDLASSYIKQLR 67 679*********************88877777768****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.89E-4 | 7 | 71 | No hit | No description |
PROSITE profile | PS50888 | 10.194 | 9 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-10 | 13 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-10 | 13 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-7 | 15 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKKCSGESSS KLDRKTVERN RRIHMKGLCF KLASLVPPQH SKASNSKDTL SQQNQLDLAS 60 SYIKQLRERI ENLKERKEKA MRSQLGMDAN STIDADNAMM VRSRLPVIEL KDSGSVIEVM 120 LISGLNKNFM LYEVIGVLEE EGAEVISASF STVGDKVFHS LHAQVLKHSI KLINDVNLIV 180 FLTINSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239749.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM467238 | 4e-41 | AM467238.2 Vitis vinifera contig VV78X066099.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239749.1 | 1e-134 | PREDICTED: uncharacterized protein LOC103338332 isoform X1 | ||||
TrEMBL | M5WEP8 | 1e-111 | M5WEP8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239749.1 | 1e-134 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-31 | bHLH family protein |