PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239289.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 696aa    MW: 75189.8 Da    PI: 8.1206
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239289.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.5e-30103187187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  XP_008239289.1 103 RWPRQETLALLKIRSEMDVSFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 187
                     8*********************************************************************866665..******985 PP
2trihelix107.49.9e-34502587187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  XP_008239289.1 502 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWEEISAGMGRMGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 587
                     8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002100162IPR001005SANT/Myb domain
PfamPF138379.2E-22102188No hitNo description
CDDcd122034.01E-27102167No hitNo description
PROSITE profilePS500906.76102160IPR017877Myb-like domain
PROSITE profilePS500906.922495559IPR017877Myb-like domain
SMARTSM007170.0024499561IPR001005SANT/Myb domain
PfamPF138374.3E-23501588No hitNo description
CDDcd122039.02E-30501566No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MQQGAGGAQT HYGVGAAEDM GAAAAAAGPS SSSMAAAAAE AGDQAQLVEA ASPISSRPPA  60
SASVNLDELM TLSGAAAAAE DALAASRDEA DRGGGGVGSS GNRWPRQETL ALLKIRSEMD  120
VSFRDATLKG PLWEDVSRKL AELGYKRSAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYK  180
FFSELEALHG TTAATSSVNV SASPAVHVTH ASPNPVSIGF SNPMPISSFR MSPTIPVMPS  240
QQPPATFPVM PSSQPPPTAA TTATHPMDIN FSSNSSSSSL GTDDEDDDDD VEGEPSSRKR  300
KRGGASTSSG GSGSTRKMME FFEVLMKQVM QKQETMQQRF LEVIEKREQD RTIREEAWKR  360
QEMARLTREH ELMSQERAIS ASRDAAIISF LQKITGQTIQ LPPPVNVHAA PPPPVPPSVP  420
VVTPLAQQSV QPPIQTSYHQ TTPQQQQPPQ QQHVQQVRHH QQQSQNLQVV MAVPEQQVQP  480
PQENIASGGG AGGSLEPASS SRWPKAEVLA LIKLRSGLES RYQEAGPKGP LWEEISAGMG  540
RMGYKRSSKR CKEKWENINK YFKKVKESNK KRPEDAKTCP YFHELDALYR KRILGGGGGG  600
GSSSSLGNQN RLEQPQQQQL QLENPKSDSA TQPQDRSLEA QPSAPVMPQT QEAVVATDQS  660
ENKNGDHSAN VETSNVGSRA NLFEEATDEA AKKKTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239289.10.0PREDICTED: trihelix transcription factor GTL1 isoform X2
TrEMBLA0A251P8440.0A0A251P844_PRUPE; Uncharacterized protein
STRINGXP_008239287.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-49Trihelix family protein