PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239114.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 459aa    MW: 50256.8 Da    PI: 7.6121
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239114.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17140189155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_008239114.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-16140199IPR016177DNA-binding domain
PROSITE profilePS5103217.649141197IPR001471AP2/ERF domain
CDDcd000182.80E-12141199No hitNo description
SMARTSM003801.6E-32141203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17141198IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-6232276IPR016177DNA-binding domain
CDDcd000185.88E-13232275No hitNo description
SMARTSM003806.1E-13233281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNLSFVC NDVVSSSDNN LLHLPATTSP IQSSASFNSS SNLTAAGDDE DSSTLNFLSP  60
NDVAADDNAH CDARTIQLFP LAQSVLSSSS SSSSSRKQWL GLSSNSGLEV EPSYYAPAEQ  120
IVPLQQKVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGT EADINFNVSD YEDDIKQMSN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKAYDK AAIKCNGREA VTNFEPNSYD GQIMSEAHNG GSDKSLDLNL  300
GIAPPSVSEL QKNNSNLSSF PVQLGCDDIP IHMRTRNENS APAPMRAQLS HGSMVASEEP  360
PIMSNINSSF FPIQVERATE KRMDVNSFPN WAWQLQGLNG GATPMPLFSA AASSGFPSST  420
ATSPPAAVTQ LHFPNTTILH HHFSPSTVTN NIPGFYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239114.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239114.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ8H4431e-97AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A251NV440.0A0A251NV44_PRUPE; Uncharacterized protein
STRINGXP_008239108.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-89related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]