PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 590aa MW: 66755 Da PI: 10.0324 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57 | 3.6e-18 | 143 | 229 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp kf+e+h +k ++s +++lede+g++++ + +k+ + l++GW++F+ +++L++gD +vF+l++ +f ++ XP_008239059.1 143 FVKSMVRSHVYSCFWLGLPSKFCEDHLSK-TGS-EMVLEDEDGNEYDAVY--IGKRAG--LSGGWRGFALEHKLDDGDALVFELTEPARF--KIY 229 89************************655.444.9***************..555544..9**********************9765555..444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-20 | 136 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-22 | 138 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.31E-25 | 141 | 232 | No hit | No description |
PROSITE profile | PS50863 | 13.056 | 143 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-23 | 143 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-17 | 143 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MVAAVDSFTA NTYEEARNQR LEENKRKFQD LGISNISKTL THLTASPNKS QQRVSRPKAK 60 NTCFDLEPRR SSRQRNPIQS YRDDVDIGLP TLRKGSRKTS SSWGSYLARP IEEVRAASYE 120 ERSAAFKAAE KLQENLQTEN PSFVKSMVRS HVYSCFWLGL PSKFCEDHLS KTGSEMVLED 180 EDGNEYDAVY IGKRAGLSGG WRGFALEHKL DDGDALVFEL TEPARFKIYI VKAYPMPSLE 240 CLKNNVDKEE ITSAEKTSKA AMKTDSESNQ KRKSKRGIVP EMDESQTSPD SEPNQKRRSK 300 RGTVPAMVDT KTFPDSESIQ KRRSERDVVP VMEDSKTSPV LEPNQRRRSK RGLVPEMDDT 360 KTAPDSEPNQ KRRSKRGLVP EMDDTKTAPD SEPNQKRRSK RGTVPAMVDT KTSPDSESIQ 420 KRRSERGVVP VMEDPKTSPV LEPNQRRRSK RGMVPVMDDT KTSPDSESNQ KQRSKRGIVP 480 EMDDTKTSPK VLPDSPKGQE IEQEVSPMKK NEVAPKQIRK KAKANRVRST ENPEGCEVQE 540 ANTESPEGCE VKQEASTTAT DSRVVKDEKE CVARKPRKKV VKERLFRKRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239059.1 | 0.0 | PREDICTED: titin homolog isoform X1 | ||||
TrEMBL | A0A251NLM7 | 0.0 | A0A251NLM7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239059.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 9e-73 | B3 family protein |