PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238774.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 697aa MW: 76857.4 Da PI: 5.2872

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238774.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	425.6	3.9e-130	314	682	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+lL++c+ea+ ++ +++++++a+l elasp+g+++ Rl ay+teALa r++r +++++++ pp+e + + +++ al+l+++vsPi+kf h XP_008238774.1 314 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPRGTTISRLMAYYTEALALRVTRLWPHVFQITPPREFD-RGDDDSGIALRLLNQVSPIPKFLH 407 6899***************************************************************8.4567777899********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rLa fA +l++pfef++ v++rled++ XP_008238774.1 408 FTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVR 497 **************************************************....***********************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 l++L+vk++E++aVn+v+qlh++l + + + +++L l++s++P++v ++eqea+hn++++ +r++++l++ysa+fd ++++lp es++rikv XP_008238774.1 498 LWMLHVKEQESVAVNCVFQLHKTLYDGTGGA--LRDFLGLIRSTNPTIVLMAEQEAEHNEPRLETRVSNSLKHYSAIFDLISSSLPLESQARIKV 590 ********************6655444..489******************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaWr 374 E++ ++rei+nv+aceg++r erhe++ekWr+ +e+ GF+ + ++e+++ q + ll++++++ y+v+++ ++l+lgW d+pL++vSaW+ XP_008238774.1 591 EEM-FAREIRNVIACEGSDRLERHESFEKWRKLMEQGGFRCMGITEREMLQSQFLLKMYADENYNVKKQgqdgAAALTLGWLDQPLYTVSAWT 682 .*****************************************************99977665567788************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.783	288	658	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-127	314	682	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPAMSTQRL DLPCSFPRKD TSRSQPIRPV 60 GLSVEKSIDS KTSSCSLKQS IRLPPLATSG PVTSASQTAA FVEARKEVND QFWEKKRGKS 120 LKRFAEQGSV DDDESCINRA KRKKGCFDNG KGDEGGDGLS LGQLGAGNFW FQPDFHVPRS 180 VQSITTGLDP PPELPFSLTC SGDEERVCYV PAEAISQPLP LSNNPWLDSI VTEITDLGEK 240 DSETRRGLGR EASAAASSAS SDSQSLGLRL NESASEHEAG NGSRDPYIPH GGAGVEAEDD 300 DDDESEGEHQ GFELVSLLTA CVEAIGLKNI AAINHFIAKL GELASPRGTT ISRLMAYYTE 360 ALALRVTRLW PHVFQITPPR EFDRGDDDSG IALRLLNQVS PIPKFLHFTS NEILLRAFEG 420 KDRVHIIDFD IKQGLQWPSL FQSLASRANP PSHIRITGIG ESKQELNETG DRLAGFAGAL 480 NLPFEFHPVV DRLEDVRLWM LHVKEQESVA VNCVFQLHKT LYDGTGGALR DFLGLIRSTN 540 PTIVLMAEQE AEHNEPRLET RVSNSLKHYS AIFDLISSSL PLESQARIKV EEMFAREIRN 600 VIACEGSDRL ERHESFEKWR KLMEQGGFRC MGITEREMLQ SQFLLKMYAD ENYNVKKQGQ 660 DGAAALTLGW LDQPLYTVSA WTPVDVAGSS SSFSQPS

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPAMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KTSSCSLKQS IRLPPLATSG PVTSASQTAA FVEARKEVND QFWEKKRGKS  120
LKRFAEQGSV DDDESCINRA KRKKGCFDNG KGDEGGDGLS LGQLGAGNFW FQPDFHVPRS  180
VQSITTGLDP PPELPFSLTC SGDEERVCYV PAEAISQPLP LSNNPWLDSI VTEITDLGEK  240
DSETRRGLGR EASAAASSAS SDSQSLGLRL NESASEHEAG NGSRDPYIPH GGAGVEAEDD  300
DDDESEGEHQ GFELVSLLTA CVEAIGLKNI AAINHFIAKL GELASPRGTT ISRLMAYYTE  360
ALALRVTRLW PHVFQITPPR EFDRGDDDSG IALRLLNQVS PIPKFLHFTS NEILLRAFEG  420
KDRVHIIDFD IKQGLQWPSL FQSLASRANP PSHIRITGIG ESKQELNETG DRLAGFAGAL  480
NLPFEFHPVV DRLEDVRLWM LHVKEQESVA VNCVFQLHKT LYDGTGGALR DFLGLIRSTN  540
PTIVLMAEQE AEHNEPRLET RVSNSLKHYS AIFDLISSSL PLESQARIKV EEMFAREIRN  600
VIACEGSDRL ERHESFEKWR KLMEQGGFRC MGITEREMLQ SQFLLKMYAD ENYNVKKQGQ  660
DGAAALTLGW LDQPLYTVSA WTPVDVAGSS SSFSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-72	321	683	25	379	Protein SCARECROW
5b3h_D	2e-72	321	683	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238774.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238774.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	M5WU02	0.0	M5WU02_PRUPE; Uncharacterized protein
STRING	XP_008238774.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein