PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008238754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 484aa MW: 54407.1 Da PI: 7.565 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 309 | 355 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ XP_008238754.1 309 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355 699***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-37 | 22 | 212 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.27E-16 | 303 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.94E-13 | 303 | 359 | No hit | No description |
PROSITE profile | PS50888 | 15.688 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-9 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-15 | 309 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-14 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWVYSI FWQPSKDSND QVSLSWAAGD 60 FRVNSDLASK RNNKVTNNHQ PKFGFNKKVT SIEAEEALLD EDMVDLEMRL VDHGDVTGSE 120 WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL 180 VCIATPYGVL ELASLDVIKE DWGFVHLSKS LFVSDNDNNN RVSQQNGSRK GNVLAPLLEN 240 RIFSGSQKKL TRQAAGTKEA APFNIGGSSP ESLSGSVGNF TCENTENTRS KKRSRSSNNG 300 ASRESSLLNH VEAERQRREK LNHRFYLLRS VVPNVSKMDR SSLLADAVAY INQLKAKVEE 360 LELKTQAQPQ NPQRVSVNNL DNQCSQSTNS IVDHHSSYNN TKVVPVEVDV KIMGSEAIIR 420 VQCPDQDYPY ARLMNALKGL GLQVYHASIS SVKELMIQDV VARMPYGFTS EEAMRIGIIK 480 RWHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008238754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238754.1 | 0.0 | PREDICTED: transcription factor bHLH14-like isoform X1 | ||||
TrEMBL | A0A314UTS3 | 0.0 | A0A314UTS3_PRUYE; Transcription factor bHLH14-like isoform X1 | ||||
STRING | XP_008238754.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-57 | bHLH family protein |