PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237925.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 441aa    MW: 49898.9 Da    PI: 6.8134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237925.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.7e-53221491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd++v+s+
  XP_008237925.1  22 LPPGFRFHPTDEELITFYLASKVYNGSFCG-VDIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRQVYSA 115
                     79*************************877.34***************8888899**************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  XP_008237925.1 116 sTGALLGMKKTLVFYKGRAPRGHKTKWVMHEYRL 149
                     78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6215173IPR003441NAC domain
PROSITE profilePS5100558.75622173IPR003441NAC domain
PfamPF023651.4E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLGMEDAVMS ELSGEDINEQ GLPPGFRFHP TDEELITFYL ASKVYNGSFC GVDIAEVDLN  60
RCEPWELPDV AKMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR QVYSASTGAL  120
LGMKKTLVFY KGRAPRGHKT KWVMHEYRLH GRLSSYGGHA CKDEWVICRI NHKTEDKKNP  180
LQLDQVEVEA ASSNCNCLPP LLESPTAAAK PTFLQQGQRP HQSHNPMQMQ SPHPLPPFLF  240
QHQENDLKSL INPVVSQPHL FSSFPINAFQ TQPSPSFSPT TTNSNTALLT NDKNPSPLQS  300
LLFKSLFSSH DQDCNNTIPK QCKTEPNYFS HFQTPANNNN NCDLNLLNLM EKNHHHHHHH  360
HQPNTPYHQY NNHPNDPLLF DCLDYSVLGF SDAAGTATTV HEHDTCPSTA FNRAGFQTML  420
DLPPIKVTGE SWPLDYIMDA K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-511717315168NAC domain-containing protein 19
3swm_B7e-511717315168NAC domain-containing protein 19
3swm_C7e-511717315168NAC domain-containing protein 19
3swm_D7e-511717315168NAC domain-containing protein 19
3swp_A7e-511717315168NAC domain-containing protein 19
3swp_B7e-511717315168NAC domain-containing protein 19
3swp_C7e-511717315168NAC domain-containing protein 19
3swp_D7e-511717315168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237925.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8227070.0KR822707.1 Prunus persica NAC transcription factor blood (BL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237925.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8516e-98NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLM5WDM10.0M5WDM1_PRUPE; Uncharacterized protein
STRINGXP_008237925.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-100NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]