PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237583.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 640aa    MW: 71434.8 Da    PI: 6.4532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237583.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.34.9e-2967151187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdqlea
  XP_008237583.1  67 RWPRQETLALLQIRSDMDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 151
                     8********************************************************************975544..6*******85 PP
2trihelix104.76.7e-33440524186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev+aLi++r++++++++++  k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+
  XP_008237583.1 440 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 524
                     8********************************************************************97.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-464126IPR001005SANT/Myb domain
PROSITE profilePS500906.84166124IPR017877Myb-like domain
CDDcd122031.06E-2266131No hitNo description
PfamPF138377.5E-1966152No hitNo description
Gene3DG3DSA:1.10.10.604.0E-4430496IPR009057Homeodomain-like
PROSITE profilePS500907.503433497IPR017877Myb-like domain
SMARTSM007170.001437499IPR001005SANT/Myb domain
CDDcd122033.45E-28439504No hitNo description
PfamPF138372.2E-22439526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLGDSSVLGS AISRDATTTA AVGVPEGGGG DGGGGGGGSN SGEDTFRGGG GGDDLLGSGE  60
RSFGGNRWPR QETLALLQIR SDMDVAFRDA SVKGPLWDEV SRKLAALGYH RSAKKCKEKF  120
ENVYKYHRRT KEGRTGKSEG KTYRFFDQLE ALENQPQTPG TTHHHQAKPH HQSTMAAVAA  180
TMATMASTIP SSAAPHPIIS NVSSQAIAAP TLNLAAPNSF PPTNPIVLPP PPQPPPPTTT  240
NPTNNPHHHH HHNTFSSSFP NISADLLTSS STSSDEDLEG RAKRKRKWKD FFQRLMKEVI  300
QKQEDLQKRF LETIEKREHE KMVREEAWRM QEMARVNRER EILAQERSIA AAKDAAVMSF  360
LQKISEQQQN PNQTPPPGQS QINNNLLQLQ PPPLVPPPPR QPAPPPQPQP QQPVTNFDVV  420
PKPNNNGGNN NLSSPASSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW EEISGAMRKL  480
GYNRSSKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDSLYRER NKFDHNNVNP  540
KPENSVPLMV RPEQQWPPPT PQQQQQQDHQ NMDIDHHHHD HQNQEDDHHD HQDKENIIGG  600
DEDEEEEDDD DEEDEEEDEG DGNYEIVANK PAPVGAAAAE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237583.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334765e-37AM433476.2 Vitis vinifera contig VV78X257449.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237583.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-142TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A251MRZ70.0A0A251MRZ7_PRUPE; Uncharacterized protein
STRINGXP_008237583.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-99Trihelix family protein