PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237378.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CAMTA
Protein Properties Length: 1086aa    MW: 121454 Da    PI: 5.7628
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237378.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1185.36.4e-58211364118
            CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     e ++rwl++ ei++iL nf+k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr
  XP_008237378.1  21 EaQHRWLRPAEICEILSNFQKFHISSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRR 115
                     449******************************************************************************************** PP

            CG-1  98 cywlLeeelekivlvhylevk 118
                     +yw+Le++l +iv+vhylevk
  XP_008237378.1 116 SYWMLEQDLMHIVFVHYLEVK 136
                     ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.99515141IPR005559CG-1 DNA-binding domain
SMARTSM010762.4E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.5E-5487589IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.1E-17503588IPR014756Immunoglobulin E-set
PROSITE profilePS5029717.926669768IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-6685762IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-17687797IPR020683Ankyrin repeat-containing domain
CDDcd002043.97E-14687795No hitNo description
Gene3DG3DSA:1.25.40.201.8E-16691798IPR020683Ankyrin repeat-containing domain
SMARTSM002483400703732IPR002110Ankyrin repeat
SMARTSM002480.0015736765IPR002110Ankyrin repeat
PROSITE profilePS5008810.286736768IPR002110Ankyrin repeat
SMARTSM000157.9909931IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.38E-7911960IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95911939IPR000048IQ motif, EF-hand binding site
PfamPF006120.0023912930IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071932954IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212933957IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4935954IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MAERGSYSQG PRLDFQQLLG EAQHRWLRPA EICEILSNFQ KFHISSEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNRA NAGGIREIDE VTPDLQKGSF WTSSPSNSNC RTPSGNTDYT  180
SPSSNLTSCE DADSGDSRQA SSFQSSFDSQ QMGNGPLTDK ADINLSLHPH LNNHDGQSSF  240
HGGNYRPYFE KDQQCYSDDS TCGIDSQKTL GVGSWEEILE QCTTGLHPVT SHGSKSSIQI  300
ASAGIPPEQQ NIASTEFLAG NSTLKEEFGS PLPFRTNWQI PLEENALQLP KWPLDQSMNL  360
QLPSNLDTRL FEQGTVDVNL RNAPELVTTH PNQRNDQLVQ NNFQAQLTNA ESQCLIISSS  420
EPDIPKDGNI NYAFTLRQQL LDQEEGLKKV DSFSRWVSKE LGEVDDLQMQ SSSGISWSTD  480
ECGNVADDSS LSPSISQDQL FSIVDFSPKW AYTDSEIEVL VIGTFLVSQK EVTKYNWSCM  540
FGEVEVPAQV LANGVLFCFA PPHSAGQVPF YVTCSNRLAC SEVREFEYQV GSTKDLDITN  600
ICNATTNDIH LHLRLESLLS LRSVSPSGQL VEGVKEKQNL ISKIISLKEE EECLPLVEPT  660
AVNDLLQHEG MEHLIKLMKE KLYSWLLHKA IEDGKGPSVL DSEGQGVIHL AAALGYDWAI  720
KPIVTAGVSI NFRDVNGWTA LHWAAFYGRE QTVAILISLG AAPGALTDPS PEFPLGRAPA  780
DLASVNRHKG ISGFLAESSL TSYLDSLTMN DAKEGGAAEI SRIRAVKTFS ERIATPGSYS  840
DMPDALSLKD SLTAVTNATQ AADRIHQMFR MQSFDRRQLT EYDTDEFGMP DERAISLIAS  900
KSHKVGPVNG HTAAIQIQKK FRGWKKRKEF LIIRQRIVKI QAHVRGHQVR KQYKAITWSV  960
GILEKVILRW RRKGTGLRGF RPDAVAKAPN LQSVPSNDDD YDFLKKGRKQ TEERLQKALT  1020
RVKSMVQYPE GRAQYRRLLN VVEGFRETKV SDMATDGSEL KVEGGDDLID IDKLLDDDTF  1080
MSIAFD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237378.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237378.10.0PREDICTED: calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A251MWZ50.0A0A251MWZ5_PRUPE; Uncharacterized protein
STRINGXP_008237378.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]