PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_008237306.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 418aa MW: 48493 Da PI: 9.8635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237306.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	42	131	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fYn+YA +GF +r ++s k+++ei +++fvC k+g ++++++ +++r+r +r++Ckak++v k++ ++k+ ++ ++ HnH+++p XP_008237306.1 42 NFYNRYAFLAGFCIRLHSSFWGKNKKEILRKEFVCCKQGAYRKDETR--ERKRQRGISRCDCKAKIVVVKTNrSKKYTISLFVDGHNHKMTP 131 6************************************99998877..9999********99888777**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	42	131	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-19	230	292	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MSGGSGSDDC VTDNGRIYIP KVRNEETPAV GMKFDLLDLV YNFYNRYAFL AGFCIRLHSS 60 FWGKNKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCD CKAKIVVVKT NRSKKYTISL 120 FVDGHNHKMT PSERVHLLRS HRRISNSTKV LTKQLGSVNI LIHQKVSIFE VQSGGMDKMG 180 FIKNDIYNLE CNVNGKLRNH DIELVTELRE MAMTGLVDVF GQMQLLDGHT ACAFLSKETI 240 ESFIWMFKEF KKAMPGGEPK TIITDQDAAM TRAISIAFPT TFHRLCIWHI TSKFSVKLPH 300 FAFKEYWSEF QKVIWDTDNK DEFDAKWNIV VTKAGLTDHP WLRSMFDLRK SWVPAYARHF 360 FAAGMSSSQR AECSHAFFKQ YISRRNSLMD FIIRFERALS HQRQKELVVD HVDAFEVA

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MSGGSGSDDC VTDNGRIYIP KVRNEETPAV GMKFDLLDLV YNFYNRYAFL AGFCIRLHSS  60
FWGKNKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCD CKAKIVVVKT NRSKKYTISL  120
FVDGHNHKMT PSERVHLLRS HRRISNSTKV LTKQLGSVNI LIHQKVSIFE VQSGGMDKMG  180
FIKNDIYNLE CNVNGKLRNH DIELVTELRE MAMTGLVDVF GQMQLLDGHT ACAFLSKETI  240
ESFIWMFKEF KKAMPGGEPK TIITDQDAAM TRAISIAFPT TFHRLCIWHI TSKFSVKLPH  300
FAFKEYWSEF QKVIWDTDNK DEFDAKWNIV VTKAGLTDHP WLRSMFDLRK SWVPAYARHF  360
FAAGMSSSQR AECSHAFFKQ YISRRNSLMD FIIRFERALS HQRQKELVVD HVDAFEVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237306.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253548	0.0	AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237306.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008237306.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-53	FAR1-related sequence 5