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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008237190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Nin-like | ||||||||
Protein Properties | Length: 959aa MW: 105541 Da PI: 5.2232 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.8 | 2.5e-29 | 599 | 650 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_008237190.1 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.075 | 583 | 670 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-26 | 602 | 650 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.54E-22 | 854 | 941 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 8.2E-25 | 856 | 938 | No hit | No description |
SMART | SM00666 | 5.1E-23 | 859 | 941 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.854 | 859 | 941 | IPR000270 | PB1 domain |
CDD | cd06407 | 6.89E-32 | 860 | 940 | No hit | No description |
Pfam | PF00564 | 4.9E-18 | 860 | 940 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MEYPVTPKEK GSDHWASSRA QVENLGSLDV GTRNSISEDM FNNISELMNF DTYAGWCSPA 60 AMDQISASFG VPSCPSVTYA PLDALNFAEQ NGEALPGTEG GETFNVGGSS FSCEDKIVFQ 120 QMDNPQFGVS TDSHDANDLA AKLNNGSFQQ NNVMDVGKYM ISRPPGLSLN EKMLKALSLF 180 KESSGGGILA QLWVPVKYGD HYLLSTCEQP YLLDHILAGY REVSRTFTFP AEEKQGSILG 240 LPGRVFVSKV PEWTSNVSYY NKAEYLRVDH AVNHQVRGSI ALPVFNFDSE MSCCAVLELV 300 STKEKPNFDT EMEIVCNALQ AVNLRTTLPP RLHPQCLSMN QRAALTEITD VLRAVCHAHI 360 LPLALTWIPC CYSEGDGDEI RRVRVRGGIT NSNEKSILCI DETACYVNDR TMQGFVHACV 420 EHHLEEGEGI AGKALKSNHP FFLHDVKVYD IYEYPLVHHA RKYGLNAAVA IRLRSTYTGD 480 DDYILEFFLP VNVKGSSEQQ LLLNNLSGTM QKMCKSLRTV SDAELAGVQG SNTGFQKGPI 540 PNSPQQRNSQ TASSDSELNS IENMPSDVFN RRNVGIEAEN PREQAPGSRR QMEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKYDPTTGGF VATGSIIQDF DAQKSRLFPE KSLPVQNSEL VTQDPVPVPS 720 VSCNNGESLA IKLEEDGCCI PTSHEEGVKK QNIPLMPQRD SKPIAIEGNK WGHSKNSLKL 780 ENSDCHFVSQ SSSSLAAADD MDTGVDGDDG IVEYNQHTSS SMTDSTNCSG STLRSSSSQS 840 FEEQKQPNMN ASSVENGSKI TVKATYKEDT IRFKFDPSVG CFQLYEEVAK RLKLQNGTFQ 900 LKYLDDEEEW VMLVSDADLR ECLEILDDIG TRSVKFMVRD TPFGVGSSGS SNCFLAGGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008237190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008237190.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A251R0A4 | 0.0 | A0A251R0A4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237190.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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