PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236887.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 361aa    MW: 40512.4 Da    PI: 6.3773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236887.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12185231455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  XP_008236887.1 185 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKHLQ 231
                     58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16185244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10186231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12186235No hitNo description
SuperFamilySSF474592.22E-16186241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDMISSAKWV SDLEMEDPTF IHQYEMNSLD YSLDDLNFQS FSSESYSSYP NFTPKATHNF  60
NNASIETSHQ AGTHERPAKQ PKNHTTWNPC TSDHTFMAKA ASSSSSHLIS FDNSNSSPPT  120
SSQQFYGNLD NTMKPKNEVE YSNGKLNLTT LISQGSYDPQ TCSPRHEQGI KRAATVTRSP  180
LHAQDHVLAE RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYVKHL QERTRMLEEQ  240
AVKKTVEAVV FVKRTQYSAD DDISSSDENF ESCSDQPLPE IEARVSDKEV LIRVHCEKTK  300
GCLAKILSEI ESLDLTIVNS SVLPFGNSTL DITVIAQMDA EFSMTVKDLV KNLRQSLLKF  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12185243866Transcription factor MYC2
5gnj_B1e-12185243866Transcription factor MYC2
5gnj_E1e-12185243866Transcription factor MYC2
5gnj_F1e-12185243866Transcription factor MYC2
5gnj_G1e-12185243866Transcription factor MYC2
5gnj_I1e-12185243866Transcription factor MYC2
5gnj_M1e-12185243866Transcription factor MYC2
5gnj_N1e-12185243866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236887.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A251NTJ50.0A0A251NTJ5_PRUPE; Uncharacterized protein
STRINGXP_008236887.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-68bHLH family protein