PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236359.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 357aa    MW: 39781.7 Da    PI: 5.0294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236359.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102873271055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_008236359.1 287 RKRREKINTRLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 327
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-14276343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.002277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12280336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11286331No hitNo description
PfamPF000101.1E-7287327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEDAGWSSHG GMYTSDEEAD FMSQLLANCS VTNEMNEASS SSIPFAICPS HGYSTTNRED  60
IDQGSHYYSD FANLYFSNGI DTYGTANNGN YYTSDSHQIM PTNYHNYETS RGLWDANGAN  120
LFLSQGEQFG MDHHQELRNG NVEEHSNTNQ TGAAFSENLL QLKRESQHEM RIREPEMEIE  180
VMVPENSKKR PCSSVEVQKK KRNVKSKKGQ KPVLTGGIED NDASTKGQSP SSTSCSGDED  240
SNASHQDLSG GVSPSSLSPK RLEDLNLNCE KKASRGSATD SQSIYARKRR EKINTRLRIL  300
QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDMWM YAPIVYNGIN IGIDFNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187201KKRPCSSVEVQKKKR
2286291RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236359.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLM5VJX70.0M5VJX7_PRUPE; Uncharacterized protein
STRINGXP_008236359.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-51bHLH family protein