PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236358.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 362aa    MW: 39665.8 Da    PI: 5.1228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236358.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-102863261055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_008236358.1 286 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 326
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14276341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-11285330No hitNo description
PfamPF000102.5E-7286326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEHIGVVAEG EWTSLSGMYT AEEVDFMAQL LGNFPSSNHP SGTSSMRVPD AFWPGDESLT  60
RNMSGNHEGS HYSSETSLSD CSNRILFPTS SNESYYLSSD SHPMLVTSNS SMSIDFGSGD  120
GIRNLNSYLI EVNDQCLNQE PSEGNAEEYG GNQPEAVALG KRKYDMTVQE PAMDDKSNPS  180
KNSMKGTQIS ENMNKRNIKS KKSLQIITSN NEEDGNAGPN RQSSSSCCSG DDSNIALHSH  240
ENSQELSPGS TSTSSLSPKK ASALNLSGKS RARRGSAIDP QSLYARKRRE KINERLRVLQ  300
NLVPNGTKVD ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APICYNGMDL GLDVKLTSPK  360
QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236358.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A314Y9900.0A0A314Y990_PRUYE; Transcription factor bHLH84
STRINGXP_008236358.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-55ROOT HAIR DEFECTIVE 6-LIKE 2