PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236260.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 523aa    MW: 57779.4 Da    PI: 6.5106
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236260.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.8e-14235294155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_008236260.1 235 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 294
                     57*******************666664478446**********99*************98 PP
2AP249.88.3e-16337388155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_008236260.1 337 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 388
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-17235304IPR016177DNA-binding domain
CDDcd000181.30E-22235304No hitNo description
PfamPF008472.2E-11235294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-16236303IPR001471AP2/ERF domain
SMARTSM003803.2E-29236308IPR001471AP2/ERF domain
PROSITE profilePS5103219.137236302IPR001471AP2/ERF domain
PRINTSPR003674.4E-6237248IPR001471AP2/ERF domain
PfamPF008473.5E-10337388IPR001471AP2/ERF domain
CDDcd000181.71E-11337396No hitNo description
SuperFamilySSF541719.15E-18337397IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-18338396IPR001471AP2/ERF domain
PROSITE profilePS5103219.111338396IPR001471AP2/ERF domain
SMARTSM003807.9E-31338402IPR001471AP2/ERF domain
PRINTSPR003674.4E-6378398IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAPASNWLSF SLMSPMEMLR SSESESPFVP YDTSSTASPH YFLDNFYANG WTNPKSQGFF  60
ADGEDHNNQS KQGHADSTNL TSFIDPQSHH QPIPKLEDFL GDSSSMVRYS DSQTETQDSS  120
SLTHMYDQSS AYFGDHQQQQ DLKAITGFQA FSTNSGSEVE DSATMARTTQ LAGGEFTGHS  180
IESNGNELGG GFSSCGTNAL SLGVTTQSSS QSKPIVPADS DGSKKIADTF GQRTSIYRGV  240
TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEDK AARAYDLAAL KYWGPTATTN  300
FPVSTYSKEL EDMKHVTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG  360
NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN AVTNFEMNRY DVEAIGKSSL PVGGAAKRLK  420
LSLEAEEQKP SVNHDQQRPQ CSSGSNNINF TSMQPAVQSI PCGIPYDAAA ATAYYHHNLF  480
QQFQPNYYGA CESSGLTPSI ATQMSMMPQQ PAEFYIWPHH QSN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236260.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A251NT740.0A0A251NT74_PRUPE; Uncharacterized protein
STRINGXP_008236260.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]