PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235836.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 795aa MW: 90535.3 Da PI: 6.7689

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235836.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.6	7.6e-32	90	181	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p XP_008235836.1 90 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 181 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-30	90	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-33	302	394	IPR018289	MULE transposase domain
Pfam	PF04434	5.0E-12	570	616	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.338	582	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMSSATGSAS GIVVFGGGGS 60 GEIYLPEGDL LDLEPYDGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ 120 FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKASLSVKM QDSGKWVVSG FVKEHNHELV 180 PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM 240 RNNRQRSLDG DIQMLLDYLR QMQADNQNFF YAVQGDEDQS TGNVIWADPK ARMNYSYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRH 360 PVSITTDHDA VIQSAIMQVF PQTRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL 420 TESIDEFESC WLSLVDRYDL RDHEWLQTVY SARRQWVPVY LRDTFFAEMS ITQRSDSMNS 480 YFDGYVNAST NLSQFFKLYE KALESRNEKE VKADFETMNT APVLKTPSPM EKQASELYTK 540 KIFMRFQEEL VGTLTFTASK GDDDGEIITY QVAKFGEDHK AYYVKLNVLE MMATCSCQMF 600 EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVM LEERSSDVYT NYLESHTVRY 660 NTLRHEAFKF VDGAKSSETY DIALDALKEA AKKVAHAPKN DGKTMVNGHV RGNLAGGASR 720 IHYASGDHEG SSGQHLSEDD MDKKIRELTN ELQCANRKCE VYRANLLSVL KDIEDHKLQL 780 SIKVQNIKIG MKDGL

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMSSATGSAS GIVVFGGGGS  60
GEIYLPEGDL LDLEPYDGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ  120
FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKASLSVKM QDSGKWVVSG FVKEHNHELV  180
PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM  240
RNNRQRSLDG DIQMLLDYLR QMQADNQNFF YAVQGDEDQS TGNVIWADPK ARMNYSYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRH  360
PVSITTDHDA VIQSAIMQVF PQTRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL  420
TESIDEFESC WLSLVDRYDL RDHEWLQTVY SARRQWVPVY LRDTFFAEMS ITQRSDSMNS  480
YFDGYVNAST NLSQFFKLYE KALESRNEKE VKADFETMNT APVLKTPSPM EKQASELYTK  540
KIFMRFQEEL VGTLTFTASK GDDDGEIITY QVAKFGEDHK AYYVKLNVLE MMATCSCQMF  600
EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVM LEERSSDVYT NYLESHTVRY  660
NTLRHEAFKF VDGAKSSETY DIALDALKEA AKKVAHAPKN DGKTMVNGHV RGNLAGGASR  720
IHYASGDHEG SSGQHLSEDD MDKKIRELTN ELQCANRKCE VYRANLLSVL KDIEDHKLQL  780
SIKVQNIKIG MKDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235836.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235836.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5VLX0	0.0	M5VLX0_PRUPE; Uncharacterized protein
STRING	XP_008235836.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]