PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235701.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 745aa    MW: 82871.5 Da    PI: 6.2919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235701.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000395746111355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  XP_008235701.1 574 RQLIQDRIKELRELIPNgA------KCSIDSLLERTIKHMLFLQ 611
                     77899************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-356168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.128561610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-4574617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGTSDLHHVL RSLCFNTEWN YAIFWKLKYR ARMVLTWEDA YYDNCEQHDS SENRCFNKTL  60
DRLHDSHYSH DPLGLAVAKM SYHVYTLGEG IVGQVAVTRK HQWIFADNLF KNNCSPFQYC  120
DGWQSQFSAG IRTIVVVAVP HGVVQLGSLN KVQVIENVKL VSEIRDVFST LQDSPVEQIR  180
NPSQSGINSS VCLTSISPKG LASGVITDCL HNLDKAANRE ESPDVWSSVF PHIGKDSDSS  240
YVFPLPENCL KKAVELVNKH GGLESSNLGC LESAKLHQSK SSILNSEHSK LVGVELLDRT  300
KSKGESSGCK DTRMTSMIYA NPLSHGSVQE NVNLCDSADL SATFLNSAAH GRVNVDRVDF  360
YQNEVLQVTE PSDVKFQKDL ENLDFQTESG HMDTSSTSMA FPAGCELHEA LGPAFLNKGN  420
YFDWEAEKNG DGITIEMPEG MKTGQLTSDS CQEHLLEAVV ANVCHSGNDV KSEKSFCKSM  480
QSLLTTEKYP EPSSHTTHTI DSENYSIDQP SLIAEDTQQC LSSSGVCGVI SPKWFSSPCP  540
SACSEQLERS SGPSKNNKKR ARPGENSRPR PRDRQLIQDR IKELRELIPN GAKCSIDSLL  600
ERTIKHMLFL QSITKHADKL NKCADAKLCH KEASMLGSSN YERGSSWAVE VGGNLKVCSI  660
MVENLNKNGQ MVVEMMCEEC SHFLEIAEAI RSLGLTILKG VTEARSDKTW ICFVVEGQNN  720
RSIHRMDILW SLVQILQPKN PMQQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235701.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235701.10.0PREDICTED: transcription factor bHLH155-like isoform X1
TrEMBLA0A251N1V50.0A0A251N1V5_PRUPE; Uncharacterized protein
STRINGXP_008235701.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7