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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23763.7 Da PI: 10.5535 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.7e-11 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ ErrRR riN +++Lr++lP++ K++Ka++L ++v+ +++L XP_008235541.1 46 KKHSDSERRRRMRINGQYATLRTVLPNL-----IKMDKASVLAETVRQVREL 92 679************************9.....6************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-12 | 35 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.272 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 46 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.21E-10 | 46 | 97 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-12 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.89E-6 | 133 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.8E-6 | 135 | 180 | No hit | No description |
CDD | cd04873 | 5.74E-6 | 136 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLSIPSYYPK QISFPKGQGV FPVNTIYSKS FFKPKSKAET KVIAAKKHSD SERRRRMRIN 60 GQYATLRTVL PNLIKMDKAS VLAETVRQVR ELKRAVAEVE AACRHGDSDE CVLPGGVDKL 120 SLEQCDGEQE GLVKATLSCD DRPGLISDMT RALGSVKGRV VRAEMVIVGG RSKNVLWIQG 180 LGDGKEGMVA LRRALKVVID RPIFAGLSKR FHLPQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235541.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235541.1 | 1e-157 | PREDICTED: transcription factor bHLH131-like | ||||
TrEMBL | M5WLM7 | 1e-152 | M5WLM7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235541.1 | 1e-157 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 3e-42 | bHLH family protein |