PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 799aa MW: 89154.6 Da PI: 6.3591 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.9e-20 | 652 | 748 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++ +W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ ++ XP_008235528.1 652 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCN 743 79*************************999999********7777*********777777777777.********************..555888 PP ..EEE CS B3 91 elvvk 95 +++++ XP_008235528.1 744 KYMIR 748 77766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-28 | 644 | 757 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 2.13E-34 | 649 | 750 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-22 | 650 | 746 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.5E-20 | 651 | 753 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.207 | 651 | 753 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-16 | 652 | 747 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 799 aa Download sequence Send to blast |
MKGKQVQVHH HQDLHAGDLH HHHMKDVNIP ISDGFGGGGA MEELEDQEDN LGVDPSEMWL 60 DDNDQETALL ADVNDPSIFY NDHFPPLPDF PCMSSSSSSS STPAPVKSVT SSSTSSSVSS 120 SSSAASWAIL RSDAEEDGER RQQHHHNSYN HRHQYSQADD QAVDVHALSS TASMEISQPS 180 DLGREGGAMD CMGAMETFGY MDLFESNEFF DPSSIFQSDS LLMEQFQQDD DHQQLLAPHQ 240 LQDPNEATAI IPQQEQEQEV AVRDDENNKK DDQKENKEPD DMAMVFLEWL RSNRETVSAE 300 DLRSVKIKKS TIECAARRLG GGKEAMKQLL KLVLEWVQTN HLQKRRGNSL TTKDADIVAQ 360 QQYQDPFQNP NPNTSPRVLE SNPSCSFTQT PWMAPPPHAA YDHAGGILVP TPPPPPPPAA 420 YPSMMGYIAP DQYVNGPGPY QPSPEYHHMI DSGQSTWPSS PFGMGTAHYG SFPDNNIHLA 480 PPPQHHPQAF GYGSQYQPYQ YFPLNGEHQL MRLGSSATKE ARKKRMARQR RLVSHHRHGH 540 QQQQHLNVQM PDHLLHQQHT RLVGNAGDLN CANSVPLQAN PGNWFYWPTA TAAPAMMPSI 600 TQEAAPPPPV QQMDRPASTQ AQNYSQGRSA AQERQERRQG WKSEKNLKFL LQKVLKQSDV 660 GSLGRIVLPK KEAETHLPEL EARDGISIPM EDIGTSHVWN MRYRYWPNNK SRMYLLENTG 720 DFVRANGLQE GDFIVIYSDV KCNKYMIRGV KVRQAGPKSE GNKRPGKSQR NQHANTPAGT 780 NGSSPSSVSA SASATHRKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-39 | 647 | 754 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-39 | 647 | 754 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235528.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411073 | 0.0 | AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235526.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X1 | ||||
Refseq | XP_008235528.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X1 | ||||
TrEMBL | M5W5U1 | 0.0 | M5W5U1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235526.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-142 | B3 family protein |