PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234549.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 752aa MW: 86491.8 Da PI: 7.0787

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234549.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.6e-26	65	150	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v+++++eHnHel p XP_008234549.1 65 FYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKEHNHELLP 150 **************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-24	65	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-31	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	543	579	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.8E-9	545	577	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	554	581	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MFMGPMKTFR SFASAFEGEV HGGCRVDLNF PTTLMDSNTL TLMATSTLEP HDAMEFESHE 60 AAYTFYKAYA KSVGFGTAKL SSRRSRASKE FIDAKFSCIR YGNKQQSDDA INPRPSPKIG 120 CKASMHVKRR PNGNWYVYSF VKEHNHELLP AQAHFFRSHR NTDPLNNDVR IRRRKNLAAV 180 SSLFSAYQNV DCLESYLRNQ HDKGRSLVLE AGDAQVLLEY FMCMQEENPK FFYAVDLNEE 240 HRLRNVFWVD AKGMEDYTNF NDVVFFDTTY FTNKYKIPLV LFIGVNHHIQ PTLLGCALIA 300 DETVYTFVWL MQTWFIAMGE QAPRVILTDQ NNAIKAAIAA VFPGTSHCFC LWHIMEKIHR 360 HLEFLSMWHD SFVGKFNKCI FKSWSEQQFE KRWWKLLDRF NLREVEWMQS LYEDRTHWVP 420 TFMRDISFAG LSPTSRSESL NSSFDKYIHG ETSLREFMER YRVILEDRYE EEAKSNFDAW 480 HETPELKSPS PFEKQMSLVY THEVFKNFQV EVLGAAACHL KKENEDGTST TYSVKDFEDN 540 QNYVVEWNES KSDIYCSCHS FEYKGYLCRH AIVVLQMSGV FTIPSKYILQ RWTNTAMSRH 600 AIGERLDEVQ SKVRRYNDLC RRAIILGEEG SLSQESYDVA LCAIKEALKQ CASLNNAVEN 660 NAKPNDSAIH GICGVDEENQ CGTASGDKLF GPKVSNANET PRRAGSGKEV ARNENTASKK 720 GKVPQLEATS VGTQDGFHQM KIQVGLKLSK IE

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MFMGPMKTFR SFASAFEGEV HGGCRVDLNF PTTLMDSNTL TLMATSTLEP HDAMEFESHE  60
AAYTFYKAYA KSVGFGTAKL SSRRSRASKE FIDAKFSCIR YGNKQQSDDA INPRPSPKIG  120
CKASMHVKRR PNGNWYVYSF VKEHNHELLP AQAHFFRSHR NTDPLNNDVR IRRRKNLAAV  180
SSLFSAYQNV DCLESYLRNQ HDKGRSLVLE AGDAQVLLEY FMCMQEENPK FFYAVDLNEE  240
HRLRNVFWVD AKGMEDYTNF NDVVFFDTTY FTNKYKIPLV LFIGVNHHIQ PTLLGCALIA  300
DETVYTFVWL MQTWFIAMGE QAPRVILTDQ NNAIKAAIAA VFPGTSHCFC LWHIMEKIHR  360
HLEFLSMWHD SFVGKFNKCI FKSWSEQQFE KRWWKLLDRF NLREVEWMQS LYEDRTHWVP  420
TFMRDISFAG LSPTSRSESL NSSFDKYIHG ETSLREFMER YRVILEDRYE EEAKSNFDAW  480
HETPELKSPS PFEKQMSLVY THEVFKNFQV EVLGAAACHL KKENEDGTST TYSVKDFEDN  540
QNYVVEWNES KSDIYCSCHS FEYKGYLCRH AIVVLQMSGV FTIPSKYILQ RWTNTAMSRH  600
AIGERLDEVQ SKVRRYNDLC RRAIILGEEG SLSQESYDVA LCAIKEALKQ CASLNNAVEN  660
NAKPNDSAIH GICGVDEENQ CGTASGDKLF GPKVSNANET PRRAGSGKEV ARNENTASKK  720
GKVPQLEATS VGTQDGFHQM KIQVGLKLSK IE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234549.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234549.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A251QQB1	0.0	A0A251QQB1_PRUPE; Uncharacterized protein
STRING	XP_008234547.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]