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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008234450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 349aa MW: 38121.1 Da PI: 10.1465 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 104 | 148 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky XP_008234450.1 104 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 148 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.565 | 7 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 21.435 | 97 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-17 | 99 | 153 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-18 | 100 | 152 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 101 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 101 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.11E-10 | 104 | 149 | No hit | No description |
Pfam | PF00249 | 2.3E-11 | 104 | 148 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MVKESMRKCS HCGHNGHNSR TCNSNGHGHG QNKGVCLKLF GVNIMEKEDD AMKKSYSMGN 60 LQAAGNADHN NNVVTIDHDA GYLSDGLIHN KRHKAAHERK KGRPWTEEEH RVFLAGLKKL 120 GKGDWRGIAR NFVTTRTPTQ VASHAQKYFL RQATYDKRKR RSSLFDMQFK ELSDQGHQDS 180 PISPTRTATE TSSEGSSSKV LPQKINTANS SPPKASVPSQ ILNRFPHLCL DSPPAAPVSP 240 PCNVPNYPAV PYMMGIPENV PYAPMMHFAR PSYHYMIKTH GNFATCAPVI SHPSGIPSPR 300 SLPSSPSMAG RIGMSSPAEK DALELKIGQP QPSQGANLSS PTSGAIRVT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00573 | DAP | Transfer from AT5G61620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008234450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008234450.1 | 0.0 | PREDICTED: myb-like protein J isoform X2 | ||||
TrEMBL | A0A251QMA5 | 0.0 | A0A251QMA5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008234449.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 4e-65 | MYB_related family protein |