PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234415.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 324aa    MW: 36255.6 Da    PI: 4.9241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234415.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00083727323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k+F +   +  H+r+H
  XP_008234415.1  7 CKICNKRFANGKAMGGHMRSH 27
                    *******************99 PP
2zf-C2H213.10.00028184206123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k F++   L  H  +H
  XP_008234415.1 184 YKCETCNKAFRSYQALGGHRASH 206
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-8429IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-8427No hitNo description
PROSITE profilePS501579.972532IPR007087Zinc finger, C2H2
SMARTSM003550.12527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-8179206No hitNo description
PfamPF139124.7E-11184208IPR007087Zinc finger, C2H2
SMARTSM003550.024184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
PfamPF139123.7E-7252275IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681253275IPR007087Zinc finger, C2H2
SMARTSM003550.61253275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKHRICKIC NKRFANGKAM GGHMRSHLAK LPLPAKPQSP QQQQQQQQQQ LSNSPESSPP  60
LSSTNRAMHS SPSLDSAIHD GDSDTESHPR NPTRRRSKRR RKVIGKAAEA ALEAEQVSSV  120
SDAFSTEDVA RCLIMLSMDK WGKWEKAKLK KEADESVDED EDEDKDEDES AFRAQTGALT  180
QGKYKCETCN KAFRSYQALG GHRASHKKII KTQVFDVEDD DDDDFEEEDD DDDDVIGNNG  240
NSGNLVVDQQ RTFECSFCFK QFDSGQALGG HKKVHYYNNL THNARNVSSS STNFVDNLVI  300
DLNLPAPEEE DGELSQLEFS TVSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234415.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A251QMJ51e-165A0A251QMJ5_PRUPE; Uncharacterized protein
TrEMBLM5X5G81e-165M5X5G8_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008234415.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-34C2H2-like zinc finger protein