PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234323.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 210aa MW: 23052.4 Da PI: 10.0163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234323.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	39	91	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h e+E++RR+++ ++ Lr++lP ++K s ae +Av+YIk+Lq XP_008234323.1 39 KKMMHREIEKKRRQEMAALYASLRSVLPLqY---IKGKRSLAEHMNEAVNYIKHLQ 91 6899***********************66...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.62E-12	36	95	No hit	No description
SuperFamily	SSF47459	7.72E-16	37	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.278	38	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	39	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-10	40	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0077	44	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDVGMFNNIN TGGQQRKSSL ALTLDSAENQ DKSNDDGKKK MMHREIEKKR RQEMAALYAS 60 LRSVLPLQYI KGKRSLAEHM NEAVNYIKHL QTRIKLLGSR RDELMIGMSS LPSLSASSST 120 SSTSPRVAVH PCFGGVEIVI SRGGSVEQGL VLSRLLKLLL GQGLTVISCA TTQVNERLVS 180 TIQSEVSDPA WGDFSGLQQI LTESLTRFSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234323.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234323.1	1e-153	PREDICTED: transcription factor bHLH120-like
Swissprot	Q9FLI0	3e-46	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A251QN49	1e-131	A0A251QN49_PRUPE; Uncharacterized protein
STRING	XP_008234323.1	1e-153	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]