PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008234210.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 700aa MW: 77368.9 Da PI: 8.1463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008234210.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H XP_008234210.1 76 KCDKCPREFCSSINYRRHIRVH 97 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.034	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MPIAKLKASN TLDAMKSEEG NDSLDTIIRQ VAKEPSISFS RAGDSPVPWI QLLHALDQQE 60 LPGWPLHSPI KVQLQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGAFWDK 120 LSPEEAKEAA SFKNVTLEEV PGSSIIKALT THIRKPGFSS MPHIYLKAGS ALLDIVQARP 180 SRFPISSQEL FSILDDASEK TFLSGTAISM QRYIFDGEAG KVGLESKNLV ACTSFLVEQK 240 LVKAWHADKD AEALRLQKLL VEEEEAAQRR QAELMERKRQ KKLRQKEQKA KDQRHGVKVD 300 VKENIDETLE AEPLVETSSP SATFDSDTTS SDVQAHDSLS LEAFQLSTAD ENVDPESQTE 360 FIHGHTDLVS GPNVERRMVQ GSGCRRAVVA RWQVLSKSQR GVPHGFHGGQ SSQTSKLSSI 420 QNHGNHRDSR AASSGNKVWS RKPKPEYDGG SLKAGVQKEA TEPDQIKNQE VLIGSISVNL 480 GNCSQESDNL AGVDDDCLLE HQIPKNNAHD KTNKPDLVHS GTNRSTVKLW RPVSRHGTKG 540 PMAIQNGNRA SEIDVVAEKG KSQNPSSENC PRLCVMDGGN DGNGNGSPRL DETGSLRFSS 600 RAAKDFLAQR WKEAIAADHV ELVLLQDSEP PRCPDNQNDG EVESSHSLKF KRSILGNAEN 660 RLVNVEGLEF PTAGAAKVKH RTKPEKGLKI KYIPKQSTVT

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MPIAKLKASN TLDAMKSEEG NDSLDTIIRQ VAKEPSISFS RAGDSPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQLQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGAFWDK  120
LSPEEAKEAA SFKNVTLEEV PGSSIIKALT THIRKPGFSS MPHIYLKAGS ALLDIVQARP  180
SRFPISSQEL FSILDDASEK TFLSGTAISM QRYIFDGEAG KVGLESKNLV ACTSFLVEQK  240
LVKAWHADKD AEALRLQKLL VEEEEAAQRR QAELMERKRQ KKLRQKEQKA KDQRHGVKVD  300
VKENIDETLE AEPLVETSSP SATFDSDTTS SDVQAHDSLS LEAFQLSTAD ENVDPESQTE  360
FIHGHTDLVS GPNVERRMVQ GSGCRRAVVA RWQVLSKSQR GVPHGFHGGQ SSQTSKLSSI  420
QNHGNHRDSR AASSGNKVWS RKPKPEYDGG SLKAGVQKEA TEPDQIKNQE VLIGSISVNL  480
GNCSQESDNL AGVDDDCLLE HQIPKNNAHD KTNKPDLVHS GTNRSTVKLW RPVSRHGTKG  540
PMAIQNGNRA SEIDVVAEKG KSQNPSSENC PRLCVMDGGN DGNGNGSPRL DETGSLRFSS  600
RAAKDFLAQR WKEAIAADHV ELVLLQDSEP PRCPDNQNDG EVESSHSLKF KRSILGNAEN  660
RLVNVEGLEF PTAGAAKVKH RTKPEKGLKI KYIPKQSTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008234210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008234210.1	0.0	PREDICTED: uncharacterized protein LOC103333192
TrEMBL	A0A251QNF6	0.0	A0A251QNF6_PRUPE; Uncharacterized protein
STRING	XP_008234210.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-139	C2H2-like zinc finger protein