PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233781.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 276aa    MW: 30403.9 Da    PI: 8.4875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233781.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1484130354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  XP_008233781.1  84 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 130
                     79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.33281130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1383134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1184130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-1184133No hitNo description
Gene3DG3DSA:4.10.280.102.8E-1584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-1287136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.41E-4182243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MESKVLEKCW LFLAMENCYC AGPQGATWAP YNSAALSNES SSFPLPWPPH ASSSTQFQFC  60
GFPNSWSAAA EGADEEDRAA TASKSHSQAE KRRRDRINAQ LATLRKLIPK SDKMDKAALL  120
GSVIDHVKDL KRKAMEVSKA FMVPTEMDEI TIDSDPAQAA ANSSSNNINM NKSRCSIVIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCKDGEE DEALCISTLK  240
QSLKLILSKI CASSMAPNCR IRSKRQRFFL PFQYPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894200.0KP689420.1 Prunus pseudocerasus isolate Unigene9695 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233781.10.0PREDICTED: transcription factor bHLH51
TrEMBLA0A251QLE20.0A0A251QLE2_PRUPE; Uncharacterized protein
STRINGXP_008233781.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-39bHLH family protein