PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233382.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 491aa    MW: 53540.3 Da    PI: 7.9283
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233382.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17175224155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_008233382.1 175 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 224
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-15175232IPR016177DNA-binding domain
PfamPF008474.0E-9175224IPR001471AP2/ERF domain
PROSITE profilePS5103217.675176232IPR001471AP2/ERF domain
CDDcd000184.34E-23176231No hitNo description
Gene3DG3DSA:3.30.730.107.7E-17176232IPR001471AP2/ERF domain
SMARTSM003802.6E-32176238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLDLNVNITL TTDASFDYEK AKDMEVEELP QGSRTQMEDS GTSNSSVVNA EEAPTPSNAG  60
EEDSTNNTTS SFIFDILKKD KDGLCNTTYY GEAKDQNPSL QFVTRSLFPV TGDGGGGKEA  120
ECGLGLSSAS STARPQWLNL SFAESGGQAQ AELRIMQQKK PQPRKSRRGP RSRSSQYRGV  180
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AARAYDRAAI KFRGVDADIN FTLGDYQEDM  240
KQLGHLNKEE FVHVLRRQST GASRGNSKYR GVALPKCGGA GGRWEARMAQ FSEKKVFEKE  300
GIKCNARREA AAVTNFVDPR IYEGEVVLDA SIEGSGHNLD LSLGISQPSS GQKGNGNLGD  360
FQFRNKERPM VNGSAASAAV GQTPHVLTML AKHPALYSGM YPGFLQKHEE MDSDHNRAQA  420
VSSPRYTNWA WQVHGNSQSV SPVQVFSIAA SSGFPSSMAS TAPPAANYFP PNFQGSAYNV  480
GRLPFPTPST M
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233382.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
TrEMBLM5XSR50.0M5XSR5_PRUPE; Uncharacterized protein
STRINGXP_008233382.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.18e-75related to AP2.7