PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233302.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 1633aa    MW: 182053 Da    PI: 5.5183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233302.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009416041630123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg sF+  s++ rH r+  H
  XP_008233302.1 1604 YQCKveGCGLSFRFVSDFSRHRRKtgH 1630
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-141555IPR003349JmjN domain
PROSITE profilePS5118313.9661657IPR003349JmjN domain
PfamPF023751.5E-141750IPR003349JmjN domain
SMARTSM005588.4E-44294463IPR003347JmjC domain
SuperFamilySSF511971.29E-25295461No hitNo description
PROSITE profilePS5118433.641297463IPR003347JmjC domain
PfamPF023732.5E-35327446IPR003347JmjC domain
SMARTSM003551715211543IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.86315441573IPR007087Zinc finger, C2H2
SMARTSM003550.1615441568IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.66E-515441581No hitNo description
Gene3DG3DSA:3.30.160.601.2E-415451572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015461568IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-1015731598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001615741598IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.94615741603IPR007087Zinc finger, C2H2
PROSITE patternPS00028015761598IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-1015841626No hitNo description
Gene3DG3DSA:3.30.160.604.5E-1115991627IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2316041630IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.55616041633IPR007087Zinc finger, C2H2
PROSITE patternPS00028016061630IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1633 aa     Download sequence    Send to blast
MGDVEIPNWL KGLPLAPEFR PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK CPELGSDVNL LNDCSPLKTG FGDGRNDGEA RAVFTTRHQE LGQSVKRVKG  120
AAVQNPPSGV HKQVWQSGEI YTLEQFESKS RAFARSILGT IKEVSPLLIE EMFWKAASEK  180
PIYVEYANDV PGSAFEEPVG QFRYTNRRRR KRNSYHRSRE NSDSKRSDLI SSSERDSHSI  240
EVKNASPKNV SDTCLEVSKS STAPEILSAE ETSQSSRRKN PNACCDTEGT AGWRLSNSPW  300
NLQVIARSPG SLTRFMPDDI PGVTSPMVYI GMLFSWFAWH VEDHELHSMN FLHTGSSKTW  360
YAVPGDYAFD FEELIRTEAF GGNVDRLAAL SLLGNKTTLI SPEVVVALGI PCCRLIQNPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPH WLEVAKEAAV RRAAMNYLPM LSHQQLLYLL  480
TMSFVSRVPR SLLPGVRGSR MRDRQKEERE LSVKKAFVED MLKENNVLSV LLQKESSYHA  540
VLWNPDLLPY TSKEPLTPIA GAPVDMKPKE NATHIQCGNN NNDQNLLFDE MSLYTENMND  600
LYLGSDDLSC DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASMKLQPEYF LAQEFPGVSG  660
LEKSHLSTGH QAFVKGCVTE DPSPVPNVMS PAKDPLIPST TKLNKDWNTV NKFLRPRSFC  720
LEHAVEIVEL LQSKGGANVL VICHSDYQKI KAPSAAIAEE IGFSFNYTEV PLDIASKEDL  780
NLIDLAVDDE HDECREDWTS KLGINLRYCV KVRKNSSSKQ VQHALTLGGL FSKQSPSSDF  840
QRVKWQSKRS RSKKLNHPAH CRPCGSIEKK DEVVERKSDD TSFKRDEKII QYSRRNYKLK  900
AGDSTGAGRI CGYPATCGEG DKHSRMASES NLRDIGNSTS SCARFYSSKS NRMSETYPVV  960
QMLESTKDIS LYSTSSQVAA KLATATLIAE GVEAQVENHS SEGRNMYGEG CGLVSRDSSD  1020
MQDEIAIPEE ASENKSEVSD MQDEIAIPEE ASENKSEVSD MQDEIAIPEE ASENKSEVSD  1080
MQDEIAIPEE ASENKSEVSD MQDEIAIPEE ASENKFEAQM VNTVMEISCM NSEICDSMTL  1140
GDEVQPENQT TNKRNDKAPV SCSSHLLQDP TFAAAEDYEG CPRETHIADE FSKDVSLEFK  1200
LQEEIKSLKG RNEEPSLSPN RQINEPSPAS IEGTSGVPRE LCAAEDSFPG LISCSEEFRT  1260
ADRSEGEHVS TSVTQMEITQ QCISMEESSQ VPRGCSSEEG PDNGVTSDTV QQEVQTTNGP  1320
MKEPILGLVI ETENQPTPGS VEEFEVLRVT CATDNINGFV ALDNKEQRKK RTTNSSEELI  1380
YSQDIARCQP LPASIQTYSR IKREPRAAQG LRNSSEVCLS PLDKELESIG SSIADPAPIP  1440
EMGRKRKREV EQIKDDNFNF NGFIKGPCEG LRPRAGKDAM SRSGIDNLHK EVEEKPVTKK  1500
VKKPSDPPNP KYKKEQEKKS HRCDLEGCRM SFGTKAELVL HKRNRCPHEG CGKRFSSHNY  1560
AMIHSRVHDD DRPLKCPWKG CSMSFKWAWA RTEHIRVHTG ERPYQCKVEG CGLSFRFVSD  1620
FSRHRRKTGH YVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-55285477145346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-55285477145346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233302.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A251QJE60.0A0A251QJE6_PRUPE; Uncharacterized protein
STRINGXP_008233302.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]