PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232997.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 546aa    MW: 62381.4 Da    PI: 5.3048
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232997.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.33.1e-2653135187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++++++ k plW+evs+km e g +r+ k+Ckek+en+ k+++++ke+ + +     + +++f+qlea
  XP_008232997.1  53 RWPRQETLALLKIRSDMDAEFKEASIKVPLWQEVSRKMGELGHNRTGKKCKEKFENIYKYHRRTKESGRPN----GKAYRFFEQLEA 135
                     8*****************************************************************99974....4569*****985 PP
2trihelix95.54.8e-30382466186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev aLi++r + + +++++  k+plWee+s++m + g+ rs+k+Ckekwen+nk+y++ike++kkr +e+s+tc y + l+
  XP_008232997.1 382 RWPKEEVEALIKIRADFDLQYQESGPKGPLWEEISAAMVKLGYDRSAKRCKEKWENINKYYRRIKESNKKR-PEDSKTCGYVRLLD 466
                     8*********************************************************************8.99******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.8E-450112IPR001005SANT/Myb domain
PfamPF138371.5E-1852136No hitNo description
PROSITE profilePS500907.15552110IPR017877Myb-like domain
CDDcd122032.33E-2252117No hitNo description
PROSITE profilePS500907.898375439IPR017877Myb-like domain
SuperFamilySSF466893.42E-5379450IPR009057Homeodomain-like
SMARTSM007176.1E-5379441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-5380438IPR009057Homeodomain-like
PfamPF138372.6E-21381467No hitNo description
CDDcd122031.54E-26381446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MLENSKLPEN PSTATSNQNN EEVAGGGEPA SVGFEEEDRA GLEEGYRNWA GNRWPRQETL  60
ALLKIRSDMD AEFKEASIKV PLWQEVSRKM GELGHNRTGK KCKEKFENIY KYHRRTKESG  120
RPNGKAYRFF EQLEALDHHD FELPPPPASE KVQTSVAEIA TNPTNVVYNA IPCSIQHPDS  180
SFVENSSSTT SSSSKESEGT HKKKRRLTEF FERMMNEVID KQENLQKKFV EVLEKHEQDR  240
ITREEAWKMQ ELARIKRERE ILVQERSVAA AKDAAVLAFL QKFSEQSGTM QFPEQAFSVH  300
FPAQPPSSMQ FPEQPSPVQL PEQPPSGQFP EQSTPVQLPV NSQADTFMDK QEKTNDANVV  360
HMSLDKQERN NGRSYMHMSS SRWPKEEVEA LIKIRADFDL QYQESGPKGP LWEEISAAMV  420
KLGYDRSAKR CKEKWENINK YYRRIKESNK KRPEDSKTCG YVRLLDALHN KKTHSIESQV  480
NSTYELKPEE LLMHMMGGQA EQHQPETVTE DGDSENVDQI QGDDENADGD GYQIASGNPS  540
SMEIMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KKKRR
2201206KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232997.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLM5WMS00.0M5WMS0_PRUPE; Uncharacterized protein
STRINGXP_008232997.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-58Trihelix family protein