PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232794.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 375aa    MW: 41915.7 Da    PI: 4.8855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232794.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l++++++  g+ +W++ ++  g+ R++k+c++rw +yl
   XP_008232794.1 14 RGPWSAEEDEALLNYINKNNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     89****************98888**********99************97 PP
2Myb_DNA-binding47.15.6e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l+ +++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_008232794.1  68 RGPFTKDEEKLIMQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22565IPR009057Homeodomain-like
PROSITE profilePS5129413.239962IPR017930Myb domain
SuperFamilySSF466894.03E-2811109IPR009057Homeodomain-like
SMARTSM007172.3E-101364IPR001005SANT/Myb domain
PfamPF002498.5E-131462IPR001005SANT/Myb domain
CDDcd001671.15E-81662No hitNo description
PROSITE profilePS5129424.69363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2566117IPR009057Homeodomain-like
SMARTSM007171.0E-1367115IPR001005SANT/Myb domain
PfamPF002495.3E-1468113IPR001005SANT/Myb domain
CDDcd001675.97E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRSPCCDNR GLKRGPWSAE EDEALLNYIN KNNGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTKDEEKLIM QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLLM  120
GIDPQTHKPV DSNCLTSTAP ASLATRHMAQ WESARLEAEA RLSRESSLFS QPPEKSEPDY  180
FLRLWNSEVG EAFRNLTTVD KSACPSPISQ ASSSTKCGSV SAVTTEVGNT LTGSSTMAGD  240
QNEDMEDKIC QTNTEDVGHN ICQTNTEDVG YKICQTNAED LEYKSCQTNT EDMGYKIFQS  300
NTEDLEYKPW RLNTKDVMAG SDSSCSNDLE DSSDTALQLL LNFPINNDMS FLEDNVDDYA  360
TTSARWTPNS FICPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232794.10.0PREDICTED: transcription factor MYB3
SwissprotQ9M2D91e-112MYB17_ARATH; Transcription factor MYB17
TrEMBLM5X1I10.0M5X1I1_PRUPE; Uncharacterized protein
STRINGXP_008232794.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-114myb domain protein 17