PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008232412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26046.2 Da PI: 8.9632 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.6 | 7.6e-24 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en n+qvtfskRr gi+KKA ELSvLC+aev vi+fs+ gk++ y XP_008232412.1 21 KLENLNNKQVTFSKRRSGIFKKAAELSVLCGAEVGVIVFSTAGKVFCY 68 67999***************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.432 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-33 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-27 | 13 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.03E-34 | 13 | 88 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-22 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-22 | 22 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-22 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-22 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVILRKLPKR TQGRKRIEIK KLENLNNKQV TFSKRRSGIF KKAAELSVLC GAEVGVIVFS 60 TAGKVFCYGH PNVETVLECY RSGVAPSAVS DDTAGDQNPN RVPMAEFNKE YMEAIKELEE 120 QKRRVVEVKE AVRMKKMVMG VVGGCGERFW WEDESVDLDV LDVQEVEHYL MSLEDVRKKV 180 AARLHEVRIL NGTLAPGALP PVPAVHRLCH MPMMTNGFGA QGGQFGGGYH GFGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6byy_A | 7e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_B | 7e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_C | 7e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6byy_D | 7e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6bz1_A | 8e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6bz1_B | 8e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6bz1_C | 8e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6bz1_D | 8e-16 | 13 | 93 | 2 | 82 | MEF2 CHIMERA |
6c9l_A | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-16 | 13 | 93 | 2 | 82 | Myocyte-specific enhancer factor 2B |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008232412.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232412.1 | 1e-174 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M5X4K9 | 1e-146 | M5X4K9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232412.1 | 1e-173 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 2e-25 | AGAMOUS-like 23 |