![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008232317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 640aa MW: 70002 Da PI: 6.2454 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.4e-51 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+evdiyk+ePwdL k ++k++++e+yfFs d+ky +g r nrat+ gyWkatg+d++v+ XP_008232317.1 28 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISEVDIYKSEPWDLAdKsSLKSRDQEYYFFSALDRKYGNGARMNRATNLGYWKATGNDRAVK 121 579**************************9.89**************75347888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +vg+kktLvf++grap+g++t+Wvmheyrl XP_008232317.1 122 H-NDITVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-58 | 26 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.606 | 28 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-26 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 640 aa Download sequence Send to blast |
MGREAEQPKA IVLAATAPVT PPPAPTALAP GFRFHPTDEE LVIYYLKRKV CRKPFKFNAI 60 SEVDIYKSEP WDLADKSSLK SRDQEYYFFS ALDRKYGNGA RMNRATNLGY WKATGNDRAV 120 KHNDITVGMK KTLVFHSGRA PDGKRTNWVM HEYRLVDEVF EKAGLGSIQD AFVLCRVFHK 180 SNIGPPNGHR YAPFVEEEWD DDDKLTLVPG QESRNEAVAG RDAFIIGNGH AACNDQNAHA 240 ARSEQNAHAA RSEQSGHAAR REQNGHAACI EGNDHAACNG ENGHGTSVQG NGHGTSVQGN 300 GRGTSVQENG HGTSVQGNGH GTSIKGNGHA TSFEGNDHGA SVKGNGHGTS VKENGHGTSV 360 KENGHFCQRE NGHGTSVKGN GHLTSVEGNG HGIIIGDDHG TTNEGNCLEM VEYGPDMHNA 420 GNNFEQDTQP ISNALVTDGE LPTENENDLP LCKTERMDDY PMTCVVNREE RLDDYPSPGP 480 DDAQPLLSLF NRHPGQLRQY KRRRHNDSNS NHSNASDISS GMTHDPCSST TTTASTEASM 540 TTTTRNFLSA LVEYQLLESL EPKDTTPPPP PEFSAALLHS SVPPSCLKYV ETLQNEIHKI 600 SIERETLKFE MMSAQAMINI LQARIDLLNK ENEDLKRNNV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 20 | 182 | 12 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008232317.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232317.1 | 0.0 | PREDICTED: uncharacterized protein LOC103331477 isoform X1 | ||||
Swissprot | Q9SQY0 | 2e-95 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A251QDI5 | 0.0 | A0A251QDI5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232317.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10490.1 | 6e-93 | NAC domain containing protein 52 |
Publications ? help Back to Top | |||
---|---|---|---|
|