PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232036.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 465aa    MW: 50594 Da    PI: 8.7018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232036.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.89.3e-1679171186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L+ea +e+ ++l+rg+l++ +Weev++ +          +   ++ +qCk+k++nl+kryk + ++  +      s++ +f++le
  XP_008232036.1  79 EWSDTAISCLLEAFTEKFNQLNRGNLRGRDWEEVAEMVsercgtggGNKSTYKTVEQCKNKIDNLKKRYKVELQRITSS-GLGASHWHWFKKLE 171
                     5*************************************999999998888999*****************999998884.788889*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1977171No hitNo description
Gene3DG3DSA:3.40.1160.102.6E-67218458IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.14E-54225458IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.456225459IPR015963Uridylate kinase, bacteria
CDDcd042546.32E-114228459No hitNo description
PfamPF006961.3E-20228438IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
TAPPPANNGD FFPRPFPDDP DRSPNQTRTP NTKRSSYYYK KLKPSSTNPN PTTSTTEAES  60
SSGQETASQR GDYRKDREEW SDTAISCLLE AFTEKFNQLN RGNLRGRDWE EVAEMVSERC  120
GTGGGNKSTY KTVEQCKNKI DNLKKRYKVE LQRITSSGLG ASHWHWFKKL EVILGSSLVP  180
KGGGGSDEER SGGRANSNVA KQPKRYTPGS TGFTNNLKSK SMPNVKWKRV MLKISGAALA  240
GDCQSIDPKV AMQIAEEVAR ACRLGVEVAI VVGGCNFFCG DTWVSSTGLD RSTAYQIGMM  300
ATVMNSVLLQ SALEKVGVQA RVQTALTMPE VSEPYNRLRA IRHLEKGRVV IFGGIGAGTG  360
NYLFTTDIAA ALRASELNAE AVLKGTNVNG IYECHSGSNS VTFDHTCYRE VVSRGITSVD  420
IMALTYCEEN GIPVVIFNLL EPGNISRALC GDQVGTLIDQ AGRIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-622194581239Uridylate kinase
3ek5_B2e-622194581239Uridylate kinase
3ek5_C2e-622194581239Uridylate kinase
3ek5_D2e-622194581239Uridylate kinase
3ek5_E2e-622194581239Uridylate kinase
3ek5_F2e-622194581239Uridylate kinase
3ek6_A2e-622194581239Uridylate kinase
3ek6_B2e-622194581239Uridylate kinase
3ek6_C2e-622194581239Uridylate kinase
3ek6_D2e-622194581239Uridylate kinase
3ek6_E2e-622194581239Uridylate kinase
3ek6_F2e-622194581239Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232036.10.0PREDICTED: uridylate kinase-like, partial
SwissprotQ3AV989e-72PYRH_SYNS9; Uridylate kinase
TrEMBLA0A251QGN80.0A0A251QGN8_PRUPE; Uncharacterized protein
STRINGXP_008232036.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein