PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231992.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 563aa    MW: 64039.3 Da    PI: 6.7301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231992.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.4e-30116201187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_008231992.2 116 RWPRQETLTLLEIRSGLDSKFKETNQKGPLWDEVSRIMgEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 201
                     8*************************************99******************************98..55667*******85 PP
2trihelix544.5e-17413493180
        trihelix   1 rWtkqevlaLie.arremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                     rWt++ev  Li+ +r+++e ++++ g+ k++lWee+++km   g++rs  +Ckekwen++   + ++e +kk++++++    
  XP_008231992.2 413 RWTEHEVASLIKlIRTSLELTIQDgGCFKEGLWEEIAAKMGCLGYRRSVGECKEKWENMSVFPRMTAECNKKHKQDAK-ANM 493
                     8**********9457788889998579*********************************999999999999955544.333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.7113176IPR001005SANT/Myb domain
CDDcd122039.34E-23115181No hitNo description
PROSITE profilePS500906.4116174IPR017877Myb-like domain
PfamPF138379.7E-20116202No hitNo description
SMARTSM007170.0011410474IPR001005SANT/Myb domain
CDDcd122031.39E-18412478No hitNo description
PfamPF138377.0E-13412483No hitNo description
PROSITE profilePS500907.689412472IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-5413471IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDEYGVPDLR QLMASRTQFC TTSQFQEPFS AHGNLTAQPN YQPMLVPAGG LVDHLHPPHY  60
STIINGCGAA HPPNAAATTS SAAALYGIDL EHGHGWNNNI NVGMNAADGG NNMNYRWPRQ  120
ETLTLLEIRS GLDSKFKETN QKGPLWDEVS RIMGEEHGYQ RSGKKCKEKF ENLYKYYKKT  180
KEGKAGRQDG KHYRFFRQLE AIYGDQTSNQ SSTYGRLNPR LYHHTTPNDT VNPKNQEVVQ  240
DQKHISCESL SFSNNSTEFD QTSSSENNDD DLSISAIDYF MMNQSMGSLK NEKQSCARPI  300
NKKSWKAKVE DFVNSQIGKV INTQEAWMEK MLKSIEHREE ERIAQEEEWR KQQAAKFDRE  360
VHEFWAKERA WVESRDAAIM EALGTFSRPG ISNHDKDKDD ISNLQIPYDT INRWTEHEVA  420
SLIKLIRTSL ELTIQDGGCF KEGLWEEIAA KMGCLGYRRS VGECKEKWEN MSVFPRMTAE  480
CNKKHKQDAK ANMYHGQLSC YEGQQEVSKR QPDGMGLQLM DGGLSPSSSN MDVSSSSFHV  540
QFNGGENLWD RYGTVKLSKG KNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231992.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231992.20.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A251QGG90.0A0A251QGG9_PRUPE; Uncharacterized protein
STRINGEMJ212510.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-85Trihelix family protein