PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231650.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 277aa    MW: 30866.2 Da    PI: 6.3649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231650.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08163203954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_008231650.2 163 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 203
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-14159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-9160208No hitNo description
SMARTSM003531.3E-12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEINIDYTGK LAINSSGLDL EDDHASMEDP ILHQISSYEY SSLWPNLPLP HHPLHQIPSS  60
STAPPPPPPH HHHHQSIADH HHHDHQMLLL AGGNNNNIFV ELNEHEDDEE AGDGGGGEEE  120
LGAMKEMMYK IAAMQPVDID PATIRRPKRR NVRISDDPQS VAARHRRERI SEKIRILQRL  180
VPGGTKMDTA SMLDEAIRYV KFLKRQIRLL QSSSSSSASS NNNHQLHDHD PQSAAAHDDH  240
DHGQCNINII NNINGSSSVG ARGAGLPLDW PRHNINV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231650.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231650.20.0PREDICTED: transcription factor HEC2-like
TrEMBLA0A251NR481e-142A0A251NR48_PRUPE; Uncharacterized protein
STRINGXP_008231650.11e-136(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-46bHLH family protein