PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231613.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 344aa    MW: 37071.7 Da    PI: 8.4688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231613.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_008231613.1 153 FTCNFCKREFSTSQALGGHQNAH 175
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-6150180No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4151179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAEESRVERL SSTSETSNIS AASDGPPPTQ KDGPENLDQK IKMKLKEKIV IDDSDDDDTQ  60
QLPKQPPPQP VVRSSSSPSP SSRLRLDLKL CNDNSARGSG STSRLELSLF NTSNPGSSNP  120
GSSNPVSRYS QPNETTDENP RGSDDKRSQP RVFTCNFCKR EFSTSQALGG HQNAHKQERA  180
LAKRRQGGLE NMGGVLGHSP FSYYNPYSSF SSPSLYGSFN RSLGVRMDSM IHKPSYPWSS  240
TPGFGRFGHG SGAWSSRAGS LLNFQSTIDR LNLEGLHANA PSGILGLPGT SSAPRFDQEI  300
GAVRNFGGSS SNFGINRPVL GDLIHREPPT SDTDAAGLDL SLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231613.10.0PREDICTED: uncharacterized protein LOC103330782
TrEMBLA0A251QB460.0A0A251QB46_PRUPE; Uncharacterized protein
STRINGXP_008231613.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-18C2H2 family protein