PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231612.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 339aa MW: 36397 Da PI: 6.3138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231612.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_008231612.1 150 FTCHFCKREFSTSQALGGHQNAH 172 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-6	147	177	No hit	No description
PROSITE profile	PS50157	11.323	150	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGEELRLERL SPTSEASNIS ATSDDLPPTK KDGPENLNQK MKKKIVIDDS DDDDTQQPPQ 60 QPPPPPVVSS SSSPSPSSRL RLDLKLCNDD SAHGLGSSSS RVELSLFNPS NLGASNPGSS 120 NPVSGYSQPN ETIDENPRGS DDKRSQPRVF TCHFCKREFS TSQALGGHQN AHKQERALAK 180 RQQGGLENMG GVLGHSPFSY YNPYSSLSSP SLYGSFNRSL GVRMDSMIHK PSYPWSSTPG 240 RFGPSSGAWS SRAGSLLNFQ STIDSLNLEG LHANAPSGIL GLPGTSSASR FDKEIDVVHN 300 FGGSSSNFEI NRPILGDLLR REPPTSDTDA AGLDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231612.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231612.1	0.0	PREDICTED: zinc finger protein 5-like
TrEMBL	A0A251QB46	0.0	A0A251QB46_PRUPE; Uncharacterized protein
STRING	XP_008231612.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-17	C2H2 family protein