PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231356.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 429aa    MW: 47975.1 Da    PI: 7.8645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231356.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-11364409655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l P+     +k  + ae+L +Ave+Ik+Lq
  XP_008231356.1 364 SIAERMRRTRISERMKKLQDLFPNM----DKQINTAEMLDLAVEFIKDLQ 409
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.764358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14361421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-10362413No hitNo description
Gene3DG3DSA:4.10.280.104.2E-13363419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-8364409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSSLLYKYNP NFKCSEAELR KNHAEFMDSN IFQQQQPQQL HQQPQQPQQQ SSGLMRYRSA  60
PSSFLMDLVD NNGGVGCEDS RYLRPSSPEV ETVLARFMSS CNEPDHHDNG ANSLQHQFEE  120
RAVKQEAGDS VSKQNGYSNS SHMMYQAQQV HALDNNSFAA INSTGLDNSL QSKIGVGNRS  180
NLVRQSSSPA GFFPDLTVDN GFNVMKDGVS FRAGNGINGE ASPSSTSRLN NQLNFSSGPS  240
SYPSRMPRIA EMENGNMGDG SQQDQGLGNA SNSHCISNFP NDSWDISSFN DLKRGRNNDG  300
NKFSNSTALE TQNNDFGHRN YGLTHHLSLP KHFEMPAMEK FLQFEDSIPC KIRAKRGFAT  360
HPRSIAERMR RTRISERMKK LQDLFPNMDK QINTAEMLDL AVEFIKDLQK QVKTLGDTKA  420
KCSCSSKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231356.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLM5X1890.0M5X189_PRUPE; Uncharacterized protein
STRINGXP_008231356.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-66bHLH family protein