PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231356.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 429aa MW: 47975.1 Da PI: 7.8645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231356.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	9e-11	364	409	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + ae+L +Ave+Ik+Lq XP_008231356.1 364 SIAERMRRTRISERMKKLQDLFPNM----DKQINTAEMLDLAVEFIKDLQ 409 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.764	358	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-14	361	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.51E-10	362	413	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-13	363	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-8	364	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-11	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MSSLLYKYNP NFKCSEAELR KNHAEFMDSN IFQQQQPQQL HQQPQQPQQQ SSGLMRYRSA 60 PSSFLMDLVD NNGGVGCEDS RYLRPSSPEV ETVLARFMSS CNEPDHHDNG ANSLQHQFEE 120 RAVKQEAGDS VSKQNGYSNS SHMMYQAQQV HALDNNSFAA INSTGLDNSL QSKIGVGNRS 180 NLVRQSSSPA GFFPDLTVDN GFNVMKDGVS FRAGNGINGE ASPSSTSRLN NQLNFSSGPS 240 SYPSRMPRIA EMENGNMGDG SQQDQGLGNA SNSHCISNFP NDSWDISSFN DLKRGRNNDG 300 NKFSNSTALE TQNNDFGHRN YGLTHHLSLP KHFEMPAMEK FLQFEDSIPC KIRAKRGFAT 360 HPRSIAERMR RTRISERMKK LQDLFPNMDK QINTAEMLDL AVEFIKDLQK QVKTLGDTKA 420 KCSCSSKQK

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MSSLLYKYNP NFKCSEAELR KNHAEFMDSN IFQQQQPQQL HQQPQQPQQQ SSGLMRYRSA  60
PSSFLMDLVD NNGGVGCEDS RYLRPSSPEV ETVLARFMSS CNEPDHHDNG ANSLQHQFEE  120
RAVKQEAGDS VSKQNGYSNS SHMMYQAQQV HALDNNSFAA INSTGLDNSL QSKIGVGNRS  180
NLVRQSSSPA GFFPDLTVDN GFNVMKDGVS FRAGNGINGE ASPSSTSRLN NQLNFSSGPS  240
SYPSRMPRIA EMENGNMGDG SQQDQGLGNA SNSHCISNFP NDSWDISSFN DLKRGRNNDG  300
NKFSNSTALE TQNNDFGHRN YGLTHHLSLP KHFEMPAMEK FLQFEDSIPC KIRAKRGFAT  360
HPRSIAERMR RTRISERMKK LQDLFPNMDK QINTAEMLDL AVEFIKDLQK QVKTLGDTKA  420
KCSCSSKQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231356.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231356.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	M5X189	0.0	M5X189_PRUPE; Uncharacterized protein
STRING	XP_008231356.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-66	bHLH family protein