PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231269.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 126aa MW: 14232.3 Da PI: 6.7242

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231269.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.8	2.9e-41	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dC+l+pyfp+++p++f vh+++Gasnv k+l++l ++ r +a+++l+yeA++r++dP+yG+vgvi++l+qq++ ++ +la XP_008231269.1 6 RCAACKYLRRRCPSDCILSPYFPSNDPQRFTSVHRIYGASNVAKMLQELLPHLRVEAAETLCYEAQCRIQDPIYGCVGVISQLHQQIQDTECQLA 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_008231269.1 101 KTRAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.538	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-41	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MNMSGRCAAC KYLRRRCPSD CILSPYFPSN DPQRFTSVHR IYGASNVAKM LQELLPHLRV 60 EAAETLCYEA QCRIQDPIYG CVGVISQLHQ QIQDTECQLA KTRAEIALMM NSDGQEPPQA 120 QVDQQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231269.1	4e-90	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	5e-50	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A251Q9A6	1e-68	A0A251Q9A6_PRUPE; Uncharacterized protein
STRING	XP_008231269.1	2e-89	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-52	LOB domain-containing protein 24