PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231189.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 309aa    MW: 34275.1 Da    PI: 8.0554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231189.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000327698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C++ F ++  L  H++ H
  XP_008231189.1 76 FPCRYCSRQFYTSQALGGHQNAH 98
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-573103No hitNo description
PROSITE profilePS5015711.30276103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKADEGIYHD FLDQKNPPHH ISSSSPMNLT SPLISSPSSS PTPREPMGMP TNKRSQHQAA  60
TGHAGSSLSG GPNRLFPCRY CSRQFYTSQA LGGHQNAHKR ERAAARRSVV AGGSYPSGPT  120
YSPHHHAPLN VPPPPPPPPP PPPPSHHHLP LNVPHHHPND QIQHHDDNPF QHFPPHQYQV  180
FHQAQNHQQQ QPRLLDPPAV PNMSSNSYSS SFFMDMDMKH NIMQQQQQDN QPPPFYWGVD  240
LTNHHLITAS STSSLPLPLP LPLRGPTEGI PPQPQPLSPA PPTHHYPFHP QNAVAPHDHT  300
HSLDLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231189.10.0PREDICTED: histone-lysine N-methyltransferase 2E
TrEMBLA0A251Q9G61e-144A0A251Q9G6_PRUPE; Uncharacterized protein
STRINGXP_008231189.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-10C2H2 family protein