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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230517.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21204.9 Da PI: 8.5901 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232.1 | 1.4e-71 | 6 | 164 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +sl +vvtvrCGhC++llsvn+ + q a + +++l++++ ++e+ ++ +++s++ s+ + XP_008230517.1 6 MASERVCYVHCNFCNTILAVSVPCNSLQNVVTVRCGHCANLLSVNMGASLQSNALAPQ------DPQLQKMHLSSEDSNKSCGSSSSSKCSKFGH 94 579*******************************************999988877776......4556666666666666666666666666666 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ e ++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_008230517.1 95 PFESVELHDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 778899999999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.8E-73 | 7 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-8 | 106 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-5 | 112 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNVVTVRC GHCANLLSVN MGASLQSNAL 60 APQDPQLQKM HLSSEDSNKS CGSSSSSKCS KFGHPFESVE LHDQPRISPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGSK QPKPDQTFAG 180 GDQGTQKSSG FY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230517.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147402 | 1e-44 | EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230517.1 | 1e-143 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 1e-76 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A251NQJ2 | 1e-120 | A0A251NQJ2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230517.1 | 1e-142 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-73 | YABBY family protein |
Publications ? help Back to Top | |||
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