![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008230410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31892.6 Da PI: 8.3589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W+ +ar+ g++R++k+c++rw +yl XP_008230410.1 13 KGPWTPEEDKLLNEYVNLHGEGRWSCVARCAGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W++Iar+++ gRt++++k++w+++ XP_008230410.1 66 RGHITPQEEGIIIELHALWGNK-WSSIARYLP-GRTDNEIKNFWRTH 110 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.65 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.38E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.554 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.23E-10 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MGWGFAEQQG WRKGPWTPEE DKLLNEYVNL HGEGRWSCVA RCAGLNRSGK SCRLRWVNYL 60 RPGLKRGHIT PQEEGIIIEL HALWGNKWSS IARYLPGRTD NEIKNFWRTH FKKKEKCTQK 120 QEKRKAQILL AKQQQQQEQQ QQQQLQEDQN LKIRATPQSE ASQGENINMT TDHEAQARQE 180 NNMNLFSSSY PNLVGDQYCL PALMNQGSVG SWADILGEEG LFMGRLWNLD DEHVNGRMDR 240 NTSLSQCNKS AMQNQAAVTA FSSGGDYSNT FYNGGYIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 13 | 114 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008230410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230410.1 | 0.0 | PREDICTED: myb-related protein 305 | ||||
TrEMBL | A0A251Q5C7 | 0.0 | A0A251Q5C7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230410.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 7e-71 | myb domain protein 121 |